Manganese in PDB 4fo8: Pseudomonas Aeruginosa Metap with Met, in Mn Form
Enzymatic activity of Pseudomonas Aeruginosa Metap with Met, in Mn Form
All present enzymatic activity of Pseudomonas Aeruginosa Metap with Met, in Mn Form:
3.4.11.18;
Protein crystallography data
The structure of Pseudomonas Aeruginosa Metap with Met, in Mn Form, PDB code: 4fo8
was solved by
Q.Z.Ye,
J.P.Lu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.77 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.651,
105.664,
133.155,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.7 /
20
|
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Manganese atom in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
(pdb code 4fo8). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 13 binding sites of Manganese where determined in the
Pseudomonas Aeruginosa Metap with Met, in Mn Form, PDB code: 4fo8:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 1 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn301
b:10.4
occ:1.00
|
O
|
A:MET305
|
2.0
|
12.4
|
1.0
|
|
OE2
|
A:GLU234
|
2.1
|
8.0
|
1.0
|
|
OD2
|
A:ASP107
|
2.2
|
7.1
|
1.0
|
|
NE2
|
A:HIS170
|
2.2
|
7.1
|
1.0
|
|
OE2
|
A:GLU203
|
2.2
|
10.4
|
1.0
|
|
C
|
A:MET305
|
2.9
|
13.2
|
1.0
|
|
CG
|
A:ASP107
|
3.1
|
10.8
|
1.0
|
|
CD
|
A:GLU234
|
3.1
|
10.4
|
1.0
|
|
CD
|
A:GLU203
|
3.1
|
15.2
|
1.0
|
|
OXT
|
A:MET305
|
3.1
|
15.0
|
1.0
|
|
CE1
|
A:HIS170
|
3.2
|
12.4
|
1.0
|
|
CD2
|
A:HIS170
|
3.2
|
8.9
|
1.0
|
|
OE1
|
A:GLU203
|
3.3
|
12.6
|
1.0
|
|
OE1
|
A:GLU234
|
3.5
|
10.8
|
1.0
|
|
MN
|
A:MN302
|
3.5
|
10.8
|
1.0
|
|
OD1
|
A:ASP107
|
3.5
|
10.2
|
1.0
|
|
OG1
|
A:THR201
|
3.6
|
9.3
|
1.0
|
|
CG2
|
A:THR201
|
3.8
|
5.0
|
1.0
|
|
CB
|
A:THR201
|
4.0
|
6.3
|
1.0
|
|
CB
|
A:ASP107
|
4.2
|
6.3
|
1.0
|
|
CA
|
A:MET305
|
4.2
|
14.0
|
1.0
|
|
ND1
|
A:HIS170
|
4.3
|
9.3
|
1.0
|
|
CG
|
A:HIS170
|
4.3
|
9.6
|
1.0
|
|
CG
|
A:GLU234
|
4.4
|
9.3
|
1.0
|
|
CG
|
A:GLU203
|
4.4
|
11.8
|
1.0
|
|
N
|
A:MET305
|
4.5
|
8.6
|
1.0
|
|
O
|
A:HOH512
|
4.6
|
30.1
|
1.0
|
|
O
|
A:HOH555
|
4.7
|
22.0
|
1.0
|
|
CB
|
A:GLU203
|
4.9
|
8.8
|
1.0
|
|
NE2
|
A:HIS177
|
5.0
|
13.1
|
1.0
|
|
Manganese binding site 2 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 2 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn302
b:10.8
occ:1.00
|
OD1
|
A:ASP107
|
2.1
|
10.2
|
1.0
|
|
OD1
|
A:ASP96
|
2.1
|
11.5
|
1.0
|
|
OE1
|
A:GLU234
|
2.2
|
10.8
|
1.0
|
|
O
|
A:MET305
|
2.3
|
12.4
|
1.0
|
|
N
|
A:MET305
|
2.3
|
8.6
|
1.0
|
|
OD2
|
A:ASP96
|
2.5
|
8.8
|
1.0
|
|
CG
|
A:ASP96
|
2.6
|
9.5
|
1.0
|
|
C
|
A:MET305
|
3.0
|
13.2
|
1.0
|
|
CA
|
A:MET305
|
3.0
|
14.0
|
1.0
|
|
CD
|
A:GLU234
|
3.0
|
10.4
|
1.0
|
|
CG
|
A:ASP107
|
3.1
|
10.8
|
1.0
|
|
OE2
|
A:GLU234
|
3.3
|
8.0
|
1.0
|
|
OD2
|
A:ASP107
|
3.3
|
7.1
|
1.0
|
|
MN
|
A:MN301
|
3.5
|
10.4
|
1.0
|
|
O
|
A:HOH481
|
3.9
|
11.2
|
1.0
|
|
OG1
|
A:THR98
|
4.0
|
8.6
|
1.0
|
|
CB
|
A:ASP96
|
4.1
|
8.1
|
1.0
|
|
OXT
|
A:MET305
|
4.1
|
15.0
|
1.0
|
|
O
|
A:ILE97
|
4.3
|
10.6
|
1.0
|
|
CG
|
A:GLU234
|
4.4
|
9.3
|
1.0
|
|
O
|
A:HOH418
|
4.4
|
11.1
|
1.0
|
|
CB
|
A:ASP107
|
4.4
|
6.3
|
1.0
|
|
N
|
A:THR108
|
4.4
|
8.5
|
1.0
|
|
CB
|
A:MET305
|
4.5
|
12.4
|
1.0
|
|
O
|
A:HOH401
|
4.5
|
21.9
|
1.0
|
|
O
|
A:HOH555
|
4.6
|
22.0
|
1.0
|
|
OE1
|
A:GLU203
|
4.6
|
12.6
|
1.0
|
|
O
|
A:THR108
|
4.6
|
6.5
|
1.0
|
|
C
|
A:ASP107
|
4.7
|
8.2
|
1.0
|
|
CA
|
A:ASP107
|
4.8
|
7.9
|
1.0
|
|
CA
|
A:ASP96
|
4.8
|
8.0
|
1.0
|
|
C
|
A:THR108
|
4.8
|
7.0
|
1.0
|
|
N
|
A:ILE97
|
4.9
|
10.6
|
1.0
|
|
CB
|
A:GLU234
|
4.9
|
6.5
|
1.0
|
|
C
|
A:ILE97
|
4.9
|
9.6
|
1.0
|
|
C
|
A:ASP96
|
5.0
|
8.8
|
1.0
|
|
OE2
|
A:GLU203
|
5.0
|
10.4
|
1.0
|
|
Manganese binding site 3 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 3 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn303
b:19.8
occ:1.00
|
O
|
A:HOH568
|
2.1
|
24.6
|
1.0
|
|
NE2
|
A:HIS144
|
2.1
|
19.6
|
1.0
|
|
O
|
B:HOH587
|
2.2
|
17.3
|
1.0
|
|
O
|
A:HOH449
|
2.3
|
24.6
|
1.0
|
|
NE2
|
B:HIS144
|
2.3
|
20.2
|
1.0
|
|
O
|
A:HOH541
|
2.3
|
28.2
|
1.0
|
|
CD2
|
A:HIS144
|
3.0
|
16.8
|
1.0
|
|
CE1
|
B:HIS144
|
3.1
|
18.0
|
1.0
|
|
CE1
|
A:HIS144
|
3.2
|
16.6
|
1.0
|
|
CD2
|
B:HIS144
|
3.3
|
16.0
|
1.0
|
|
OE1
|
B:GLU193
|
4.2
|
31.3
|
1.0
|
|
O
|
B:GLY142
|
4.2
|
19.6
|
1.0
|
|
CG
|
A:HIS144
|
4.2
|
18.4
|
1.0
|
|
O
|
B:HOH496
|
4.2
|
25.8
|
1.0
|
|
O
|
A:HOH524
|
4.3
|
35.1
|
1.0
|
|
ND1
|
A:HIS144
|
4.3
|
20.0
|
1.0
|
|
ND1
|
B:HIS144
|
4.3
|
18.8
|
1.0
|
|
OE1
|
A:GLU193
|
4.4
|
31.6
|
1.0
|
|
CG
|
B:HIS144
|
4.4
|
15.6
|
1.0
|
|
O
|
A:GLY189
|
4.5
|
27.4
|
1.0
|
|
O
|
A:GLY191
|
4.5
|
22.8
|
1.0
|
|
O
|
A:HOH509
|
4.6
|
38.7
|
1.0
|
|
CG
|
B:GLU193
|
4.9
|
24.5
|
1.0
|
|
O
|
A:HOH491
|
4.9
|
26.2
|
1.0
|
|
CD
|
B:GLU193
|
5.0
|
32.4
|
1.0
|
|
Manganese binding site 4 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 4 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn304
b:17.6
occ:0.50
|
O
|
A:ASN74
|
2.2
|
10.6
|
1.0
|
|
O
|
A:SER230
|
2.3
|
7.4
|
1.0
|
|
O
|
A:VAL76
|
2.4
|
8.8
|
1.0
|
|
O
|
A:HOH551
|
2.4
|
13.1
|
1.0
|
|
C
|
A:ASN74
|
3.2
|
11.1
|
1.0
|
|
C
|
A:SER230
|
3.3
|
9.7
|
1.0
|
|
O
|
A:HOH403
|
3.4
|
12.5
|
1.0
|
|
C
|
A:VAL76
|
3.5
|
10.3
|
1.0
|
|
N
|
A:ASN74
|
3.6
|
10.1
|
1.0
|
|
N
|
A:SER230
|
3.8
|
9.9
|
1.0
|
|
CA
|
A:ASN74
|
3.9
|
11.4
|
1.0
|
|
C
|
A:ILE73
|
3.9
|
10.7
|
1.0
|
|
CB
|
A:SER230
|
3.9
|
12.3
|
1.0
|
|
CA
|
A:SER230
|
3.9
|
11.5
|
1.0
|
|
N
|
A:VAL76
|
4.0
|
9.9
|
1.0
|
|
O
|
A:ILE73
|
4.1
|
11.8
|
1.0
|
|
N
|
A:HIS75
|
4.2
|
10.9
|
1.0
|
|
C
|
A:HIS75
|
4.3
|
10.5
|
1.0
|
|
CA
|
A:VAL76
|
4.3
|
9.3
|
1.0
|
|
O
|
A:SER72
|
4.3
|
9.4
|
1.0
|
|
O
|
A:HOH433
|
4.4
|
14.9
|
1.0
|
|
N
|
A:ALA231
|
4.4
|
10.3
|
1.0
|
|
CD1
|
A:ILE92
|
4.5
|
13.1
|
1.0
|
|
CA
|
A:HIS75
|
4.5
|
10.4
|
1.0
|
|
N
|
A:VAL77
|
4.5
|
9.7
|
1.0
|
|
CG1
|
A:ILE92
|
4.6
|
8.6
|
1.0
|
|
C
|
A:SER72
|
4.6
|
10.7
|
1.0
|
|
CA
|
A:ILE73
|
4.6
|
11.0
|
1.0
|
|
CA
|
A:VAL77
|
4.7
|
9.5
|
1.0
|
|
N
|
A:ILE73
|
4.7
|
10.1
|
1.0
|
|
CA
|
A:ALA231
|
4.7
|
9.5
|
1.0
|
|
OG
|
A:SER230
|
4.8
|
13.9
|
1.0
|
|
CB
|
A:VAL76
|
4.9
|
9.6
|
1.0
|
|
CB
|
A:SER72
|
4.9
|
10.9
|
1.0
|
|
O
|
A:HIS75
|
4.9
|
10.7
|
1.0
|
|
C
|
A:LEU229
|
5.0
|
11.6
|
1.0
|
|
Manganese binding site 5 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 5 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn301
b:11.0
occ:1.00
|
O
|
B:MET304
|
2.0
|
13.2
|
1.0
|
|
OE2
|
B:GLU234
|
2.2
|
9.1
|
1.0
|
|
OE2
|
B:GLU203
|
2.2
|
9.7
|
1.0
|
|
OD2
|
B:ASP107
|
2.2
|
9.4
|
1.0
|
|
NE2
|
B:HIS170
|
2.3
|
7.7
|
1.0
|
|
C
|
B:MET304
|
2.8
|
13.4
|
1.0
|
|
OXT
|
B:MET304
|
3.0
|
13.5
|
1.0
|
|
CD
|
B:GLU203
|
3.1
|
16.8
|
1.0
|
|
CG
|
B:ASP107
|
3.1
|
8.1
|
1.0
|
|
CD
|
B:GLU234
|
3.1
|
10.5
|
1.0
|
|
CD2
|
B:HIS170
|
3.2
|
8.6
|
1.0
|
|
CE1
|
B:HIS170
|
3.3
|
9.3
|
1.0
|
|
OE1
|
B:GLU203
|
3.3
|
16.1
|
1.0
|
|
MN
|
B:MN302
|
3.4
|
10.4
|
1.0
|
|
OE1
|
B:GLU234
|
3.5
|
12.3
|
1.0
|
|
OD1
|
B:ASP107
|
3.5
|
9.8
|
1.0
|
|
OG1
|
B:THR201
|
3.6
|
7.4
|
1.0
|
|
CG2
|
B:THR201
|
3.7
|
8.8
|
1.0
|
|
CB
|
B:THR201
|
4.0
|
10.9
|
1.0
|
|
CA
|
B:MET304
|
4.2
|
13.7
|
1.0
|
|
CB
|
B:ASP107
|
4.3
|
9.6
|
1.0
|
|
CG
|
B:HIS170
|
4.4
|
10.9
|
1.0
|
|
ND1
|
B:HIS170
|
4.4
|
9.7
|
1.0
|
|
CG
|
B:GLU203
|
4.4
|
11.6
|
1.0
|
|
CG
|
B:GLU234
|
4.4
|
8.6
|
1.0
|
|
N
|
B:MET304
|
4.5
|
12.4
|
1.0
|
|
O
|
B:HOH477
|
4.6
|
24.4
|
1.0
|
|
O
|
B:HOH582
|
4.7
|
23.1
|
1.0
|
|
NE2
|
B:HIS177
|
4.9
|
12.9
|
1.0
|
|
CB
|
B:GLU203
|
4.9
|
9.4
|
1.0
|
|
Manganese binding site 6 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 6 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn302
b:10.4
occ:1.00
|
OD1
|
B:ASP96
|
2.1
|
9.8
|
1.0
|
|
OD1
|
B:ASP107
|
2.1
|
9.8
|
1.0
|
|
OE1
|
B:GLU234
|
2.2
|
12.3
|
1.0
|
|
O
|
B:MET304
|
2.2
|
13.2
|
1.0
|
|
N
|
B:MET304
|
2.4
|
12.4
|
1.0
|
|
OD2
|
B:ASP96
|
2.5
|
13.1
|
1.0
|
|
CG
|
B:ASP96
|
2.6
|
10.3
|
1.0
|
|
C
|
B:MET304
|
2.9
|
13.4
|
1.0
|
|
CA
|
B:MET304
|
3.0
|
13.7
|
1.0
|
|
CG
|
B:ASP107
|
3.0
|
8.1
|
1.0
|
|
CD
|
B:GLU234
|
3.1
|
10.5
|
1.0
|
|
OD2
|
B:ASP107
|
3.3
|
9.4
|
1.0
|
|
OE2
|
B:GLU234
|
3.3
|
9.1
|
1.0
|
|
MN
|
B:MN301
|
3.4
|
11.0
|
1.0
|
|
O
|
B:HOH443
|
3.9
|
10.7
|
1.0
|
|
OG1
|
B:THR98
|
4.0
|
10.5
|
1.0
|
|
OXT
|
B:MET304
|
4.1
|
13.5
|
1.0
|
|
CB
|
B:ASP96
|
4.1
|
9.9
|
1.0
|
|
O
|
B:ILE97
|
4.3
|
11.1
|
1.0
|
|
N
|
B:THR108
|
4.3
|
6.2
|
1.0
|
|
O
|
B:HOH434
|
4.4
|
14.0
|
1.0
|
|
CB
|
B:ASP107
|
4.4
|
9.6
|
1.0
|
|
CG
|
B:GLU234
|
4.4
|
8.6
|
1.0
|
|
CB
|
B:MET304
|
4.5
|
10.6
|
1.0
|
|
O
|
B:HOH403
|
4.6
|
19.0
|
1.0
|
|
OE1
|
B:GLU203
|
4.7
|
16.1
|
1.0
|
|
O
|
B:HOH582
|
4.7
|
23.1
|
1.0
|
|
O
|
B:THR108
|
4.7
|
8.2
|
1.0
|
|
C
|
B:ASP107
|
4.7
|
7.9
|
1.0
|
|
CA
|
B:ASP107
|
4.8
|
6.2
|
1.0
|
|
C
|
B:THR108
|
4.8
|
9.2
|
1.0
|
|
CA
|
B:ASP96
|
4.9
|
10.0
|
1.0
|
|
CB
|
B:GLU234
|
4.9
|
8.6
|
1.0
|
|
OE2
|
B:GLU203
|
4.9
|
9.7
|
1.0
|
|
C
|
B:ILE97
|
5.0
|
9.4
|
1.0
|
|
C
|
B:ASP96
|
5.0
|
7.8
|
1.0
|
|
CA
|
B:THR108
|
5.0
|
8.8
|
1.0
|
|
N
|
B:ILE97
|
5.0
|
7.7
|
1.0
|
|
Manganese binding site 7 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 7 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn303
b:20.3
occ:0.50
|
O
|
B:HOH405
|
2.2
|
15.2
|
1.0
|
|
O
|
B:SER230
|
2.2
|
11.4
|
1.0
|
|
O
|
B:VAL76
|
2.3
|
13.8
|
1.0
|
|
O
|
B:ASN74
|
2.4
|
15.5
|
1.0
|
|
C
|
B:SER230
|
3.3
|
13.3
|
1.0
|
|
C
|
B:ASN74
|
3.3
|
15.6
|
1.0
|
|
O
|
B:HOH447
|
3.4
|
12.7
|
1.0
|
|
C
|
B:VAL76
|
3.4
|
12.0
|
1.0
|
|
N
|
B:ASN74
|
3.6
|
13.9
|
1.0
|
|
N
|
B:SER230
|
3.8
|
13.7
|
1.0
|
|
CA
|
B:ASN74
|
3.9
|
14.6
|
1.0
|
|
C
|
B:ILE73
|
3.9
|
14.8
|
1.0
|
|
CA
|
B:SER230
|
3.9
|
12.5
|
1.0
|
|
N
|
B:VAL76
|
3.9
|
14.2
|
1.0
|
|
CB
|
B:SER230
|
4.0
|
12.7
|
1.0
|
|
O
|
B:ILE73
|
4.2
|
16.3
|
1.0
|
|
O
|
B:HOH436
|
4.2
|
14.4
|
1.0
|
|
CA
|
B:VAL76
|
4.2
|
13.0
|
1.0
|
|
N
|
B:HIS75
|
4.3
|
13.7
|
1.0
|
|
O
|
B:SER72
|
4.4
|
10.8
|
1.0
|
|
N
|
B:ALA231
|
4.4
|
10.0
|
1.0
|
|
C
|
B:HIS75
|
4.4
|
14.3
|
1.0
|
|
N
|
B:VAL77
|
4.4
|
14.3
|
1.0
|
|
C
|
B:SER72
|
4.6
|
12.9
|
1.0
|
|
CA
|
B:VAL77
|
4.6
|
12.9
|
1.0
|
|
N
|
B:ILE73
|
4.6
|
12.0
|
1.0
|
|
CA
|
B:ILE73
|
4.6
|
15.4
|
1.0
|
|
CG1
|
B:ILE92
|
4.6
|
8.9
|
1.0
|
|
CA
|
B:HIS75
|
4.6
|
16.1
|
1.0
|
|
OG
|
B:SER230
|
4.7
|
16.9
|
1.0
|
|
CD1
|
B:ILE92
|
4.7
|
10.1
|
1.0
|
|
CA
|
B:ALA231
|
4.8
|
10.5
|
1.0
|
|
CB
|
B:VAL76
|
4.8
|
12.7
|
1.0
|
|
CB
|
B:SER72
|
4.9
|
12.2
|
1.0
|
|
O
|
B:VAL77
|
5.0
|
12.2
|
1.0
|
|
Manganese binding site 8 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 8 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn301
b:14.6
occ:1.00
|
OE2
|
C:GLU203
|
2.1
|
14.2
|
1.0
|
|
OE2
|
C:GLU234
|
2.1
|
12.9
|
1.0
|
|
OXT
|
C:MET304
|
2.1
|
18.1
|
1.0
|
|
OD2
|
C:ASP107
|
2.2
|
10.1
|
1.0
|
|
NE2
|
C:HIS170
|
2.2
|
9.7
|
1.0
|
|
C
|
C:MET304
|
2.9
|
17.5
|
1.0
|
|
O
|
C:MET304
|
3.0
|
17.3
|
1.0
|
|
CD
|
C:GLU203
|
3.0
|
13.8
|
1.0
|
|
CD
|
C:GLU234
|
3.1
|
12.1
|
1.0
|
|
CE1
|
C:HIS170
|
3.2
|
14.7
|
1.0
|
|
CD2
|
C:HIS170
|
3.2
|
11.3
|
1.0
|
|
CG
|
C:ASP107
|
3.2
|
13.4
|
1.0
|
|
OE1
|
C:GLU203
|
3.4
|
16.2
|
1.0
|
|
MN
|
C:MN302
|
3.5
|
13.3
|
1.0
|
|
OE1
|
C:GLU234
|
3.6
|
12.9
|
1.0
|
|
OG1
|
C:THR201
|
3.6
|
12.0
|
1.0
|
|
OD1
|
C:ASP107
|
3.7
|
12.5
|
1.0
|
|
CG2
|
C:THR201
|
3.8
|
9.2
|
1.0
|
|
CB
|
C:THR201
|
4.0
|
11.4
|
1.0
|
|
CA
|
C:MET304
|
4.3
|
16.2
|
1.0
|
|
CG
|
C:GLU203
|
4.3
|
12.0
|
1.0
|
|
ND1
|
C:HIS170
|
4.3
|
10.4
|
1.0
|
|
CG
|
C:HIS170
|
4.3
|
12.5
|
1.0
|
|
CB
|
C:ASP107
|
4.4
|
10.9
|
1.0
|
|
CG
|
C:GLU234
|
4.4
|
12.5
|
1.0
|
|
N
|
C:MET304
|
4.5
|
14.4
|
1.0
|
|
O
|
C:HOH446
|
4.7
|
28.7
|
1.0
|
|
O
|
C:HOH455
|
4.7
|
25.2
|
1.0
|
|
CB
|
C:GLU203
|
4.8
|
11.8
|
1.0
|
|
NE2
|
C:HIS177
|
4.9
|
17.4
|
1.0
|
|
Manganese binding site 9 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 9 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn302
b:13.3
occ:1.00
|
OD1
|
C:ASP96
|
2.1
|
12.8
|
1.0
|
|
OD1
|
C:ASP107
|
2.1
|
12.5
|
1.0
|
|
OXT
|
C:MET304
|
2.2
|
18.1
|
1.0
|
|
OE1
|
C:GLU234
|
2.3
|
12.9
|
1.0
|
|
N
|
C:MET304
|
2.4
|
14.4
|
1.0
|
|
OD2
|
C:ASP96
|
2.4
|
11.5
|
1.0
|
|
CG
|
C:ASP96
|
2.6
|
9.2
|
1.0
|
|
C
|
C:MET304
|
2.9
|
17.5
|
1.0
|
|
CG
|
C:ASP107
|
3.0
|
13.4
|
1.0
|
|
CA
|
C:MET304
|
3.0
|
16.2
|
1.0
|
|
CD
|
C:GLU234
|
3.1
|
12.1
|
1.0
|
|
OD2
|
C:ASP107
|
3.3
|
10.1
|
1.0
|
|
OE2
|
C:GLU234
|
3.3
|
12.9
|
1.0
|
|
MN
|
C:MN301
|
3.5
|
14.6
|
1.0
|
|
OG1
|
C:THR98
|
3.9
|
13.3
|
1.0
|
|
O
|
C:HOH435
|
4.0
|
11.8
|
1.0
|
|
O
|
C:MET304
|
4.1
|
17.3
|
1.0
|
|
CB
|
C:ASP96
|
4.1
|
12.6
|
1.0
|
|
O
|
C:ILE97
|
4.3
|
13.5
|
1.0
|
|
O
|
C:HOH474
|
4.4
|
26.1
|
1.0
|
|
N
|
C:THR108
|
4.4
|
11.1
|
1.0
|
|
CB
|
C:ASP107
|
4.4
|
10.9
|
1.0
|
|
O
|
C:HOH403
|
4.5
|
14.4
|
1.0
|
|
CB
|
C:MET304
|
4.5
|
14.9
|
1.0
|
|
CG
|
C:GLU234
|
4.5
|
12.5
|
1.0
|
|
O
|
C:HOH446
|
4.6
|
28.7
|
1.0
|
|
OE1
|
C:GLU203
|
4.7
|
16.2
|
1.0
|
|
O
|
C:THR108
|
4.7
|
11.4
|
1.0
|
|
C
|
C:ASP107
|
4.8
|
11.1
|
1.0
|
|
C
|
C:THR108
|
4.9
|
11.9
|
1.0
|
|
CA
|
C:ASP96
|
4.9
|
12.2
|
1.0
|
|
CA
|
C:ASP107
|
4.9
|
10.1
|
1.0
|
|
OE2
|
C:GLU203
|
4.9
|
14.2
|
1.0
|
|
CB
|
C:GLU234
|
4.9
|
11.4
|
1.0
|
|
C
|
C:ASP96
|
4.9
|
13.2
|
1.0
|
|
C
|
C:ILE97
|
5.0
|
13.2
|
1.0
|
|
N
|
C:ILE97
|
5.0
|
12.9
|
1.0
|
|
Manganese binding site 10 out
of 13 in 4fo8
Go back to
Manganese Binding Sites List in 4fo8
Manganese binding site 10 out
of 13 in the Pseudomonas Aeruginosa Metap with Met, in Mn Form
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Pseudomonas Aeruginosa Metap with Met, in Mn Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn303
b:16.8
occ:0.50
|
O
|
C:HOH565
|
2.2
|
17.7
|
1.0
|
|
O
|
C:SER230
|
2.2
|
10.7
|
1.0
|
|
O
|
C:ASN74
|
2.3
|
10.5
|
1.0
|
|
O
|
C:VAL76
|
2.3
|
13.5
|
1.0
|
|
C
|
C:ASN74
|
3.2
|
11.1
|
1.0
|
|
C
|
C:SER230
|
3.3
|
9.1
|
1.0
|
|
C
|
C:VAL76
|
3.5
|
12.2
|
1.0
|
|
O
|
C:HOH426
|
3.5
|
17.7
|
1.0
|
|
N
|
C:ASN74
|
3.6
|
11.9
|
1.0
|
|
CA
|
C:ASN74
|
3.8
|
12.4
|
1.0
|
|
N
|
C:SER230
|
3.9
|
9.7
|
1.0
|
|
CB
|
C:SER230
|
3.9
|
11.8
|
1.0
|
|
C
|
C:ILE73
|
3.9
|
12.8
|
1.0
|
|
CA
|
C:SER230
|
3.9
|
9.9
|
1.0
|
|
N
|
C:VAL76
|
4.0
|
11.6
|
1.0
|
|
O
|
C:ILE73
|
4.2
|
10.8
|
1.0
|
|
N
|
C:HIS75
|
4.3
|
9.7
|
1.0
|
|
CA
|
C:VAL76
|
4.3
|
11.4
|
1.0
|
|
N
|
C:ALA231
|
4.4
|
8.5
|
1.0
|
|
O
|
C:SER72
|
4.4
|
11.5
|
1.0
|
|
C
|
C:HIS75
|
4.4
|
10.3
|
1.0
|
|
N
|
C:VAL77
|
4.5
|
10.9
|
1.0
|
|
O
|
C:HOH430
|
4.5
|
12.5
|
1.0
|
|
C
|
C:SER72
|
4.5
|
10.8
|
1.0
|
|
N
|
C:ILE73
|
4.6
|
13.4
|
1.0
|
|
CA
|
C:ILE73
|
4.6
|
13.5
|
1.0
|
|
CA
|
C:HIS75
|
4.6
|
11.1
|
1.0
|
|
CA
|
C:VAL77
|
4.7
|
11.2
|
1.0
|
|
CA
|
C:ALA231
|
4.7
|
9.1
|
1.0
|
|
OG
|
C:SER230
|
4.7
|
12.5
|
1.0
|
|
CD1
|
C:ILE92
|
4.7
|
13.0
|
1.0
|
|
CG1
|
C:ILE92
|
4.7
|
11.8
|
1.0
|
|
CB
|
C:VAL76
|
4.8
|
11.7
|
1.0
|
|
CB
|
C:SER72
|
4.9
|
10.2
|
1.0
|
|
O
|
C:ILE92
|
5.0
|
10.4
|
1.0
|
|
Reference:
J.P.Lu,
Q.Z.Ye.
Methionine Excision Captured By the Structures of A Methionine Aminopeptidase To Be Published.
Page generated: Sat Oct 5 19:27:45 2024
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