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Manganese in PDB 4fo7: Pseudomonas Aeruginosa Metap, in Mn Form

Enzymatic activity of Pseudomonas Aeruginosa Metap, in Mn Form

All present enzymatic activity of Pseudomonas Aeruginosa Metap, in Mn Form:
3.4.11.18;

Protein crystallography data

The structure of Pseudomonas Aeruginosa Metap, in Mn Form, PDB code: 4fo7 was solved by Q.Z.Ye, J.P.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.80 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.020, 111.422, 140.165, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Manganese atom in the Pseudomonas Aeruginosa Metap, in Mn Form (pdb code 4fo7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 14 binding sites of Manganese where determined in the Pseudomonas Aeruginosa Metap, in Mn Form, PDB code: 4fo7:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 14 in 4fo7

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Manganese binding site 1 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:13.3
occ:1.00
 O A:HOH524 2.2 11.7 1.0
OD2 A:ASP107 2.4 12.9 1.0
OE2 A:GLU234 2.4 13.8 1.0
NE2 A:HIS170 2.4 11.3 1.0
OE2 A:GLU203 2.4 12.5 1.0
CD A:GLU203 3.3 15.9 1.0
CE1 A:HIS170 3.3 14.1 1.0
CG A:ASP107 3.3 12.7 1.0
CD A:GLU234 3.3 17.5 1.0
CD2 A:HIS170 3.4 12.7 1.0
OE1 A:GLU203 3.5 15.6 1.0
MN A:MN302 3.5 12.2 1.0
OE1 A:GLU234 3.6 14.2 1.0
OD1 A:ASP107 3.6 13.1 1.0
OG1 A:THR201 3.9 11.1 1.0
CG2 A:THR201 4.1 10.7 1.0
ND1 A:HIS170 4.4 13.8 1.0
CB A:THR201 4.4 13.3 1.0
CG A:HIS170 4.5 11.5 1.0
CB A:ASP107 4.6 9.6 1.0
CG A:GLU203 4.6 14.5 1.0
CG A:GLU234 4.7 11.0 1.0
O A:HOH421 4.7 16.0 1.0

Manganese binding site 2 out of 14 in 4fo7

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Manganese binding site 2 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:12.2
occ:1.00
 OD1 A:ASP96 2.2 11.7 1.0
OD1 A:ASP107 2.3 13.1 1.0
O A:HOH524 2.3 11.7 1.0
OE1 A:GLU234 2.3 14.2 1.0
O A:HOH421 2.4 16.0 1.0
OD2 A:ASP96 2.7 14.7 1.0
CG A:ASP96 2.9 14.2 1.0
CG A:ASP107 3.3 12.7 1.0
CD A:GLU234 3.3 17.5 1.0
OD2 A:ASP107 3.5 12.9 1.0
MN A:MN301 3.5 13.3 1.0
OE2 A:GLU234 3.5 13.8 1.0
O A:HOH430 4.1 14.9 1.0
OG1 A:THR98 4.1 10.5 1.0
CB A:ASP96 4.4 12.3 1.0
O A:ILE97 4.5 9.7 1.0
CG A:GLU234 4.7 11.0 1.0
O A:HOH423 4.7 15.3 1.0
N A:THR108 4.7 9.5 1.0
CB A:ASP107 4.7 9.6 1.0
OE1 A:GLU203 4.8 15.6 1.0
O A:THR108 4.9 11.0 1.0

Manganese binding site 3 out of 14 in 4fo7

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Manganese binding site 3 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn303

b:19.5
occ:1.00
 O A:HOH523 2.2 33.8 1.0
O A:HOH435 2.3 28.7 1.0
O B:HOH431 2.3 21.1 1.0
O B:HOH497 2.4 27.0 1.0
NE2 A:HIS144 2.5 22.8 1.0
NE2 B:HIS144 2.6 19.2 1.0
CE1 A:HIS144 3.3 28.9 1.0
CE1 B:HIS144 3.5 23.0 1.0
CD2 B:HIS144 3.5 21.2 1.0
CD2 A:HIS144 3.6 23.6 1.0
OE1 B:GLU193 4.3 30.8 1.0
O B:HOH484 4.5 32.2 1.0
ND1 A:HIS144 4.5 24.6 1.0
OE1 A:GLU193 4.6 30.1 1.0
O B:GLY142 4.6 19.4 1.0
ND1 B:HIS144 4.7 19.7 1.0
O A:HOH424 4.7 28.2 1.0
CG A:HIS144 4.7 21.6 1.0
CG B:HIS144 4.7 20.2 1.0
O A:HOH493 4.8 31.3 1.0
CD B:GLU193 4.8 33.0 1.0

Manganese binding site 4 out of 14 in 4fo7

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Manganese binding site 4 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn304

b:17.2
occ:0.50
 O A:HOH510 2.4 16.4 1.0
O A:VAL76 2.4 13.7 1.0
O A:SER230 2.5 12.5 1.0
O A:ASN74 2.5 12.4 1.0
O A:HOH407 3.5 15.4 1.0
C A:ASN74 3.5 14.0 1.0
C A:SER230 3.5 13.2 1.0
C A:VAL76 3.6 12.7 1.0
N A:ASN74 3.9 15.6 1.0
CA A:SER230 4.0 12.8 1.0
N A:VAL76 4.1 12.0 1.0
N A:SER230 4.1 12.8 1.0
C A:ILE73 4.1 15.0 1.0
CA A:ASN74 4.1 14.9 1.0
CB A:SER230 4.1 11.9 1.0
O A:ILE73 4.3 12.5 1.0
CA A:VAL76 4.4 10.9 1.0
N A:HIS75 4.4 11.0 1.0
C A:HIS75 4.5 11.4 1.0
O A:HOH410 4.5 13.6 1.0
N A:VAL77 4.6 13.9 1.0
O A:SER72 4.6 14.1 1.0
N A:ALA231 4.6 12.2 1.0
CA A:HIS75 4.7 11.9 1.0
C A:SER72 4.8 13.5 1.0
OG A:SER230 4.8 13.1 1.0
CA A:ILE73 4.8 14.9 1.0
CA A:VAL77 4.9 12.6 1.0
CB A:VAL76 4.9 13.8 1.0
CD1 A:ILE92 4.9 14.4 1.0
N A:ILE73 4.9 13.3 1.0

Manganese binding site 5 out of 14 in 4fo7

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Manganese binding site 5 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:11.9
occ:1.00
 O B:HOH546 2.2 12.2 1.0
OE2 B:GLU203 2.3 11.8 1.0
OE2 B:GLU234 2.3 15.5 1.0
OD2 B:ASP107 2.4 8.9 1.0
NE2 B:HIS170 2.4 10.3 1.0
CD B:GLU203 3.2 13.7 1.0
CD B:GLU234 3.3 14.7 1.0
CD2 B:HIS170 3.3 9.0 1.0
CG B:ASP107 3.3 10.8 1.0
CE1 B:HIS170 3.4 8.4 1.0
OE1 B:GLU203 3.5 18.9 1.0
MN B:MN302 3.5 10.4 1.0
OE1 B:GLU234 3.5 11.6 1.0
OD1 B:ASP107 3.7 12.4 1.0
OG1 B:THR201 3.8 10.7 1.0
CG2 B:THR201 4.1 11.4 1.0
CB B:THR201 4.3 8.4 1.0
CG B:HIS170 4.5 10.0 1.0
ND1 B:HIS170 4.5 12.2 1.0
CG B:GLU203 4.6 11.5 1.0
CB B:ASP107 4.6 10.2 1.0
CG B:GLU234 4.7 8.7 1.0
O B:HOH437 4.8 14.9 1.0

Manganese binding site 6 out of 14 in 4fo7

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Manganese binding site 6 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn302

b:10.4
occ:1.00
 O B:HOH546 2.2 12.2 1.0
OD1 B:ASP96 2.2 10.0 1.0
OD1 B:ASP107 2.3 12.4 1.0
OE1 B:GLU234 2.3 11.6 1.0
O B:HOH437 2.5 14.9 1.0
OD2 B:ASP96 2.7 15.9 1.0
CG B:ASP96 2.9 12.3 1.0
CG B:ASP107 3.2 10.8 1.0
CD B:GLU234 3.3 14.7 1.0
OD2 B:ASP107 3.4 8.9 1.0
MN B:MN301 3.5 11.9 1.0
OE2 B:GLU234 3.5 15.5 1.0
O B:HOH418 4.1 14.6 1.0
OG1 B:THR98 4.2 10.2 1.0
CB B:ASP96 4.4 10.0 1.0
O B:ILE97 4.5 11.6 1.0
O B:HOH428 4.5 16.4 1.0
CG B:GLU234 4.7 8.7 1.0
N B:THR108 4.7 7.7 1.0
CB B:ASP107 4.7 10.2 1.0
OE1 B:GLU203 4.7 18.9 1.0
O B:THR108 4.9 10.3 1.0
O B:HOH491 4.9 32.6 1.0

Manganese binding site 7 out of 14 in 4fo7

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Manganese binding site 7 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn303

b:21.0
occ:0.50
 O B:HOH544 2.4 18.5 1.0
O B:VAL76 2.4 18.4 1.0
O B:SER230 2.4 15.5 1.0
O B:ASN74 2.5 18.5 1.0
O B:HOH438 3.4 16.1 1.0
C B:SER230 3.5 15.8 1.0
C B:ASN74 3.5 18.8 1.0
C B:VAL76 3.6 19.2 1.0
N B:ASN74 3.9 18.9 1.0
N B:VAL76 4.1 18.6 1.0
CA B:SER230 4.1 14.6 1.0
C B:ILE73 4.1 18.2 1.0
N B:SER230 4.1 15.8 1.0
CA B:ASN74 4.2 19.2 1.0
CB B:SER230 4.2 15.1 1.0
CA B:VAL76 4.4 18.2 1.0
O B:HOH458 4.4 15.2 1.0
O B:ILE73 4.4 18.9 1.0
O B:SER72 4.5 17.4 1.0
C B:HIS75 4.5 18.7 1.0
N B:HIS75 4.5 18.8 1.0
N B:VAL77 4.5 19.1 1.0
N B:ALA231 4.6 13.3 1.0
CA B:VAL77 4.7 17.5 1.0
C B:SER72 4.7 16.3 1.0
CA B:HIS75 4.8 19.4 1.0
CA B:ILE73 4.8 17.9 1.0
OG B:SER230 4.8 15.8 1.0
N B:ILE73 4.8 16.5 1.0
CA B:ALA231 4.9 14.6 1.0
CB B:VAL76 4.9 16.1 1.0

Manganese binding site 8 out of 14 in 4fo7

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Manganese binding site 8 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn301

b:17.4
occ:1.00
 O C:HOH500 2.1 15.9 1.0
OE2 C:GLU234 2.3 16.6 1.0
OD2 C:ASP107 2.4 17.0 1.0
OE2 C:GLU203 2.4 18.4 1.0
NE2 C:HIS170 2.4 14.1 1.0
CD C:GLU203 3.3 28.2 1.0
CD C:GLU234 3.3 16.4 1.0
CG C:ASP107 3.3 17.6 1.0
CE1 C:HIS170 3.4 19.8 1.0
CD2 C:HIS170 3.4 18.9 1.0
MN C:MN302 3.5 14.8 1.0
OE1 C:GLU203 3.5 24.9 1.0
OE1 C:GLU234 3.6 14.8 1.0
OD1 C:ASP107 3.7 15.1 1.0
OG1 C:THR201 4.0 18.1 1.0
CG2 C:THR201 4.2 15.5 1.0
CB C:THR201 4.4 18.4 1.0
ND1 C:HIS170 4.5 12.1 1.0
CG C:HIS170 4.5 16.4 1.0
CB C:ASP107 4.6 14.7 1.0
CG C:GLU203 4.6 19.1 1.0
CG C:GLU234 4.7 14.6 1.0
O C:HOH416 4.7 16.1 1.0

Manganese binding site 9 out of 14 in 4fo7

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Manganese binding site 9 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn302

b:14.8
occ:1.00
 O C:HOH500 2.1 15.9 1.0
OD1 C:ASP107 2.3 15.1 1.0
OD1 C:ASP96 2.3 16.3 1.0
O C:HOH416 2.4 16.1 1.0
OE1 C:GLU234 2.4 14.8 1.0
OD2 C:ASP96 2.6 16.5 1.0
CG C:ASP96 2.9 17.4 1.0
CG C:ASP107 3.2 17.6 1.0
CD C:GLU234 3.3 16.4 1.0
OD2 C:ASP107 3.4 17.0 1.0
MN C:MN301 3.5 17.4 1.0
OE2 C:GLU234 3.5 16.6 1.0
OG1 C:THR98 4.2 15.3 1.0
O C:HOH448 4.3 16.3 1.0
CB C:ASP96 4.4 16.2 1.0
O C:ILE97 4.6 14.6 1.0
CB C:ASP107 4.6 14.7 1.0
O C:HOH427 4.7 21.3 1.0
N C:THR108 4.7 15.5 1.0
CG C:GLU234 4.7 14.6 1.0
OE1 C:GLU203 4.8 24.9 1.0
O C:HOH453 4.8 35.3 1.0

Manganese binding site 10 out of 14 in 4fo7

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Manganese binding site 10 out of 14 in the Pseudomonas Aeruginosa Metap, in Mn Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Pseudomonas Aeruginosa Metap, in Mn Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn303

b:19.5
occ:0.50
 O C:VAL76 2.4 14.1 1.0
O C:HOH401 2.4 15.3 1.0
O C:SER230 2.5 14.8 1.0
O C:ASN74 2.6 14.0 1.0
O C:HOH409 3.5 17.6 1.0
C C:SER230 3.6 13.3 1.0
C C:ASN74 3.6 14.8 1.0
C C:VAL76 3.6 14.9 1.0
N C:ASN74 3.9 14.0 1.0
CB C:SER230 4.1 15.1 1.0
N C:VAL76 4.1 13.3 1.0
C C:ILE73 4.1 14.8 1.0
CA C:SER230 4.1 13.9 1.0
N C:SER230 4.1 13.9 1.0
CA C:ASN74 4.2 13.8 1.0
O C:ILE73 4.3 10.9 1.0
CA C:VAL76 4.4 13.9 1.0
O C:HOH413 4.4 15.0 1.0
O C:SER72 4.5 13.7 1.0
C C:HIS75 4.5 13.0 1.0
N C:HIS75 4.5 12.0 1.0
N C:VAL77 4.6 14.2 1.0
N C:ALA231 4.6 13.5 1.0
CA C:VAL77 4.7 16.1 1.0
C C:SER72 4.8 13.7 1.0
N C:ILE73 4.8 13.2 1.0
CA C:ILE73 4.8 14.6 1.0
CA C:HIS75 4.8 13.4 1.0
OG C:SER230 4.8 16.1 1.0
CB C:VAL76 4.9 14.7 1.0
CA C:ALA231 4.9 11.3 1.0

Reference:

J.P.Lu, Q.Z.Ye. Methionine Excision Captured By the Structures of A Methionine Aminopeptidase To Be Published.
Page generated: Sat Oct 5 19:27:45 2024

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