Manganese in PDB 4f4k: Dna Polymerase I Large Fragment Complex 6

All present enzymatic activity of Dna Polymerase I Large Fragment Complex 6:
2.7.7.7;

The structure of Dna Polymerase I Large Fragment Complex 6, PDB code: 4f4k was solved by W.Wang, L.S.Beese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.06 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	93.810, 109.220, 150.580, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 19.4

The binding sites of Manganese atom in the Dna Polymerase I Large Fragment Complex 6 (pdb code 4f4k). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Dna Polymerase I Large Fragment Complex 6, PDB code: 4f4k:

Manganese binding site 1 out of 1 in the Dna Polymerase I Large Fragment Complex 6


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Dna Polymerase I Large Fragment Complex 6 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn902 b:17.1 occ:1.00 OD2 D:ASP830 2.1 21.4 1.0 O2A D:DG3901 2.1 20.3 1.0 O2G D:DG3901 2.1 21.9 1.0 O D:TYR654 2.2 16.2 1.0 OD1 D:ASP653 2.2 12.7 0.5 O2B D:DG3901 2.3 20.3 1.0 CG D:ASP830 3.2 14.0 1.0 PB D:DG3901 3.3 18.6 1.0 CG D:ASP653 3.3 18.4 0.5 PG D:DG3901 3.4 20.0 1.0 C D:TYR654 3.4 11.2 1.0 PA D:DG3901 3.5 17.7 1.0 H D:GLN656 3.6 18.0 1.0 O3B D:DG3901 3.6 17.3 1.0 HA D:SER655 3.7 11.8 1.0 HB2 D:ASP653 3.7 11.6 0.5 OD2 D:ASP653 3.7 19.5 0.5 OD1 D:ASP830 3.7 14.1 1.0 O D:HOH1065 3.8 19.0 1.0 O3A D:DG3901 3.8 16.6 1.0 HG22 D:ILE657 3.9 24.9 1.0 OD2 D:ASP653 3.9 32.2 0.5 H D:ILE657 3.9 18.1 1.0 N D:GLN656 4.1 15.0 1.0 HB2 D:ASP830 4.2 14.2 1.0 HB2 D:TYR654 4.2 9.2 1.0 C5' D:DG3901 4.2 23.6 1.0 N D:SER655 4.2 10.2 1.0 CA D:SER655 4.2 9.8 1.0 CB D:ASP830 4.3 11.8 1.0 N D:TYR654 4.3 10.5 1.0 CA D:TYR654 4.3 10.2 1.0 O5' D:DG3901 4.3 14.9 1.0 O D:HOH1280 4.3 27.2 1.0 H D:TYR654 4.4 12.6 1.0 O3G D:DG3901 4.4 23.2 1.0 O1G D:DG3901 4.4 21.5 1.0 CB D:ASP653 4.5 9.7 0.5 HB D:ILE657 4.5 23.7 1.0 C D:SER655 4.5 13.4 1.0 CG2 D:ILE657 4.6 20.7 1.0 HG21 D:ILE657 4.6 24.9 1.0 O1A D:DG3901 4.7 21.6 1.0 CB D:TYR654 4.7 7.7 1.0 CB D:ASP653 4.7 13.0 0.5 O1B D:DG3901 4.7 18.2 1.0 CG D:ASP653 4.7 19.9 0.5 C D:ASP653 4.7 11.5 1.0 N D:ILE657 4.7 15.1 1.0 HB3 D:ASP830 4.8 14.2 1.0 O D:ASP830 4.8 8.9 1.0 HB3 D:TYR654 4.8 9.2 1.0 O D:HOH1245 4.9 32.6 1.0 HA D:GLN656 5.0 19.1 1.0 HB3 D:ASP653 5.0 15.7 0.5

W.Wang, H.W.Hellinga, L.S.Beese. Structures of A High-Fidelity Dna Polymerase To Be Published.