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Manganese in PDB 4ewv: Crystal Structure of GH3.12 in Complex with Ampcpp

Protein crystallography data

The structure of Crystal Structure of GH3.12 in Complex with Ampcpp, PDB code: 4ewv was solved by C.Zubieta, M.Nanao, J.Jez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.03 / 2.90
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 116.348, 116.348, 94.663, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 28.6

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of GH3.12 in Complex with Ampcpp (pdb code 4ewv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of GH3.12 in Complex with Ampcpp, PDB code: 4ewv:

Manganese binding site 1 out of 1 in 4ewv

Go back to Manganese Binding Sites List in 4ewv
Manganese binding site 1 out of 1 in the Crystal Structure of GH3.12 in Complex with Ampcpp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of GH3.12 in Complex with Ampcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:0.4
occ:1.00
O2B A:APC601 2.2 58.7 1.0
PB A:APC601 3.8 49.1 1.0
O1A A:APC601 3.9 39.7 1.0
CB A:ARG417 3.9 0.6 1.0
CE A:LYS550 3.9 58.1 1.0
O4' A:APC601 4.3 78.9 1.0
NZ A:LYS550 4.4 65.4 1.0
O1B A:APC601 4.4 0.2 1.0
C3A A:APC601 4.6 0.3 1.0
C1' A:APC601 4.6 56.8 1.0
C4' A:APC601 4.6 87.4 1.0
OD2 A:ASP398 4.8 79.1 1.0
O3B A:APC601 4.8 0.8 1.0
O2' A:APC601 4.8 51.4 1.0
PA A:APC601 4.9 0.4 1.0
O3' A:APC601 4.9 66.9 1.0
O1G A:APC601 4.9 0.7 1.0
CG2 A:VAL420 4.9 0.2 1.0

Reference:

C.S.Westfall, C.Zubieta, J.Herrmann, U.Kapp, M.H.Nanao, J.M.Jez. Structural Basis For Prereceptor Modulation of Plant Hormones By GH3 Proteins. Science V. 336 1708 2012.
ISSN: ISSN 0036-8075
PubMed: 22628555
DOI: 10.1126/SCIENCE.1221863
Page generated: Sat Oct 5 19:20:54 2024

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