Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
      4e5g
      4e5h
      4e5i
      4e5j
      4e5l
      4e7i
      4e7k
      4e7l
      4edg
      4edk
      4edr
      4edt
      4edv
      4ee1
      4ee3
      4ee4
      4ee5
      4eea
      4eeg
      4eem
      4eeo
      4efd
      4ekk
      4ewv
      4f2d
      4f7i
      4fbk
      4fbq
      4fbw
      4fby
      4fci
      4fcx
      4fix
      4fiy
      4fo6
      4g3h
      4rla
      4xis
      5cev
      5cna
      5rla
      8ick
      8icn
      8ico
      8icp
      8icr
      8ics
      8ict
      8icu
      8icv
    PDB 8icw-9xim

Manganese in the structure of Structure of A Dna Replication Protein (pdb 4ee1)






The binding sites of Manganese atom in the structure of Structure of A Dna Replication Protein (pdb code 4ee1). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 4ee1 structure was solved by R.U.RYMER, F.A.SOLORIO, C.CHU, J.E.CORN, J.D.WANG, J.M.BERGER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)49.8-2.0
Space groupP61
a (A)151.986
b (A)151.986
c (A)38.826
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)18.2
Rfree (%)21.7


Manganese Binding Sites:

Manganese binding site 1 out of 3 in 4ee1


Manganese binding site 1 out of 3 in 4ee1
Click to enlarge
stereopicture of Manganese binding site 1 out of 3 in 4ee1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 4ee1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu266, A: Asp310, A: Asp312, A: Ala314, A: Ctp501, A: Hoh848, A: Hoh849, A: Hoh850, A: Hoh851, A: Hoh867, A: Hoh890,

conact list:


AtomAtomDistance (A)
MnOE2 A:Glu2664.26
MnCB A:Asp3104.82
MnOD2 A:Asp3103.98
MnCG A:Asp3104.76
MnOD2 A:Asp3123.49
MnOD1 A:Asp3124.17
MnCG A:Asp3124.20
MnCB A:Ala3144.42
MnO1A A:Ctp5014.37
MnO A:Hoh8482.67
MnO A:Hoh8492.76
MnO A:Hoh8502.73
MnO A:Hoh8512.72
MnO A:Hoh8673.98
MnO A:Hoh8904.68

interactive model:


Manganese binding site 2 out of 3 in 4ee1


Manganese binding site 2 out of 3 in 4ee1
Click to enlarge
stereopicture of Manganese binding site 2 out of 3 in 4ee1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 4ee1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp270, A: Asp310, A: Asp343, A: Ctp501, A: Mn504, A: Hoh708, A: Hoh834, A: Hoh835, A: Hoh836, A: Hoh838, A: Hoh849, A: Hoh851, A: Hoh867, A: Hoh868,

conact list:


AtomAtomDistance (A)
MnOD2 A:Asp2704.05
MnOD1 A:Asp2704.78
MnCG A:Asp2704.85
MnCB A:Asp3104.59
MnOD2 A:Asp3102.48
MnOD1 A:Asp3103.41
MnCG A:Asp3103.25
MnCB A:Asp3433.45
MnOD2 A:Asp3432.48
MnOD1 A:Asp3434.49
MnCG A:Asp3433.33
MnCA A:Asp3434.91
MnO3B A:Ctp5014.81
MnPA A:Ctp5013.63
MnO2A A:Ctp5014.56
MnO1B A:Ctp5013.85
MnPB A:Ctp5013.39
MnC5' A:Ctp5014.94
MnO5' A:Ctp5014.72
MnO2B A:Ctp5012.41
MnO3A A:Ctp5013.67
MnO1A A:Ctp5012.50
MnMN A:Mn5043.53
MnO A:Hoh7084.26
MnO A:Hoh8342.55
MnO A:Hoh8352.45
MnO A:Hoh8363.87
MnO A:Hoh8384.30
MnO A:Hoh8494.08
MnO A:Hoh8513.93
MnO A:Hoh8673.84
MnO A:Hoh8684.94

interactive model:


Manganese binding site 3 out of 3 in 4ee1


Manganese binding site 3 out of 3 in 4ee1
Click to enlarge
stereopicture of Manganese binding site 3 out of 3 in 4ee1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 4ee1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg146, A: Asp270, A: Asp343, A: Asp345, A: Glu346, A: Ctp501, A: Mn503, A: Hoh769, A: Hoh834, A: Hoh835, A: Hoh836, A: Hoh837, A: Hoh838, A: Hoh866, A: Hoh868,

conact list:


AtomAtomDistance (A)
MnNH2 A:Arg1464.07
MnOD2 A:Asp2704.98
MnOD1 A:Asp2704.29
MnCB A:Asp3434.54
MnOD2 A:Asp3432.42
MnOD1 A:Asp3433.48
MnCG A:Asp3433.24
MnCB A:Asp3454.39
MnOD2 A:Asp3454.11
MnCG A:Asp3454.77
MnOE2 A:Glu3464.39
MnCD A:Glu3464.60
MnCG A:Glu3464.69
MnPG A:Ctp5013.57
MnO3B A:Ctp5013.94
MnO2G A:Ctp5012.43
MnO3G A:Ctp5014.07
MnO1B A:Ctp5013.35
MnPB A:Ctp5013.35
MnO2B A:Ctp5012.47
MnO3A A:Ctp5014.81
MnO1G A:Ctp5014.81
MnMN A:Mn5033.53
MnO A:Hoh7694.40
MnO A:Hoh8343.92
MnO A:Hoh8354.79
MnO A:Hoh8362.52
MnO A:Hoh8372.52
MnO A:Hoh8382.48
MnO A:Hoh8664.10
MnO A:Hoh8684.90

interactive model:




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