Manganese in PDB 4db1: Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp

The structure of Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp, PDB code: 4db1 was solved by V.A.Klenchin, J.C.Deacon, A.C.Combs, L.A.Leinwand, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	100.206, 94.310, 110.894, 90.00, 112.29, 90.00
R / Rfree (%)	21 / 25.7

The binding sites of Manganese atom in the Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp (pdb code 4db1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp, PDB code: 4db1:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn802 b:21.6 occ:1.00 O3G A:ANP801 1.8 17.9 1.0 O A:HOH902 2.0 5.6 1.0 O A:HOH901 2.0 11.9 1.0 O2B A:ANP801 2.1 12.6 1.0 OG1 A:THR185 2.1 19.6 1.0 OG A:SER242 2.3 20.0 1.0 CB A:SER242 3.1 20.3 1.0 PG A:ANP801 3.2 16.3 1.0 CB A:THR185 3.3 20.7 1.0 PB A:ANP801 3.4 16.4 1.0 N A:SER242 3.7 24.5 1.0 N3B A:ANP801 3.8 13.6 1.0 O1G A:ANP801 3.9 12.1 1.0 CA A:SER242 4.0 22.2 1.0 N A:THR185 4.2 19.9 1.0 OD1 A:ASP461 4.2 31.0 1.0 O2A A:ANP801 4.2 14.3 1.0 CG2 A:THR185 4.2 23.5 1.0 CA A:THR185 4.3 20.2 1.0 O2G A:ANP801 4.3 18.4 1.0 OD2 A:ASP461 4.3 29.1 1.0 O1B A:ANP801 4.4 13.1 1.0 O3A A:ANP801 4.4 18.4 1.0 O A:HOH929 4.5 21.9 1.0 PA A:ANP801 4.6 18.5 1.0 O A:ASN240 4.6 21.5 1.0 CG A:ASP461 4.7 28.5 1.0 O1A A:ANP801 4.8 20.5 1.0 CE A:LYS184 4.8 20.7 1.0 CB A:LYS184 4.8 20.0 1.0 C A:SER241 4.8 26.8 1.0

Manganese binding site 2 out of 2 in the Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn802 b:17.7 occ:1.00 O3G B:ANP801 1.8 12.8 1.0 O2B B:ANP801 1.9 12.2 1.0 O B:HOH902 2.1 19.5 1.0 OG1 B:THR185 2.2 17.4 1.0 O B:HOH901 2.2 14.1 1.0 OG B:SER242 2.4 17.4 1.0 CB B:SER242 3.1 17.7 1.0 PG B:ANP801 3.2 15.4 1.0 CB B:THR185 3.2 17.6 1.0 PB B:ANP801 3.3 17.5 1.0 N B:SER242 3.7 18.1 1.0 N3B B:ANP801 3.7 13.5 1.0 O1G B:ANP801 4.0 13.4 1.0 CA B:SER242 4.0 17.9 1.0 O2A B:ANP801 4.1 10.1 1.0 CG2 B:THR185 4.2 17.0 1.0 N B:THR185 4.2 21.4 1.0 CA B:THR185 4.3 18.3 1.0 OD1 B:ASP461 4.3 38.3 1.0 O3A B:ANP801 4.4 16.5 1.0 O2G B:ANP801 4.4 21.9 1.0 O1B B:ANP801 4.4 10.9 1.0 OD2 B:ASP461 4.4 38.1 1.0 O B:ASN240 4.5 18.1 1.0 PA B:ANP801 4.6 15.4 1.0 O1A B:ANP801 4.7 20.6 1.0 C B:SER241 4.7 18.6 1.0 CG B:ASP461 4.8 34.7 1.0 CE B:LYS184 4.9 19.2 1.0

V.A.Klenchin, J.C.Deacon, A.C.Combs, L.A.Leinwand, I.Rayment. Cardiac Human Myosin S1DC, Beta Isoform Complexed with Mn-Amppnp To Be Published.