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Manganese in PDB 4c2s: Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor

Enzymatic activity of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor

All present enzymatic activity of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor:
2.4.1.37; 2.4.1.40;

Protein crystallography data

The structure of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor, PDB code: 4c2s was solved by J.T.Weadge, M.Palcic, A.Henriksen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.88 / 2.48
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.510, 52.610, 80.270, 90.00, 89.97, 90.00
R / Rfree (%) 14.503 / 18.203

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor (pdb code 4c2s). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor, PDB code: 4c2s:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 4c2s

Go back to Manganese Binding Sites List in 4c2s
Manganese binding site 1 out of 2 in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn406

b:12.2
occ:1.00
O1B A:UDP475 1.9 8.6 1.0
OD2 A:ASP211 2.0 11.1 1.0
OD1 A:ASP213 2.2 10.9 1.0
O1A A:UDP475 2.3 7.0 1.0
OD2 A:ASP213 2.6 10.5 1.0
CG A:ASP213 2.7 10.9 1.0
PB A:UDP475 3.1 8.9 1.0
CG A:ASP211 3.1 10.6 1.0
O3A A:UDP475 3.5 8.0 1.0
PA A:UDP475 3.5 6.8 1.0
CB A:ASP211 3.6 9.9 1.0
O3B A:UDP475 3.8 9.1 1.0
O3' A:UDP475 3.9 2.0 1.0
NZ A:LYS346 4.0 12.3 1.0
OD1 A:ASP211 4.2 11.2 1.0
CB A:ASP213 4.2 10.5 1.0
O2B A:UDP475 4.2 9.6 1.0
C5' A:UDP475 4.3 4.2 1.0
O5' A:UDP475 4.4 5.0 1.0
O2A A:UDP475 4.6 6.9 1.0
C3' A:UDP475 4.6 3.0 1.0
CE A:LYS346 4.8 12.7 1.0
SD A:MET214 4.9 11.4 1.0
N A:ASP213 4.9 10.4 1.0
O A:ASP213 4.9 10.7 1.0
C4' A:UDP475 4.9 3.6 1.0
CA A:ASP211 5.0 8.8 1.0
CA A:ASP213 5.0 10.7 1.0

Manganese binding site 2 out of 2 in 4c2s

Go back to Manganese Binding Sites List in 4c2s
Manganese binding site 2 out of 2 in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta P156L Mutant) in Complex with Udp and Deoxy-H-Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn406

b:14.5
occ:1.00
O1B B:UDP475 1.9 9.9 1.0
OD2 B:ASP211 2.0 9.8 1.0
O1A B:UDP475 2.0 10.4 1.0
OD1 B:ASP213 2.2 10.6 1.0
OD2 B:ASP213 2.9 8.4 1.0
CG B:ASP213 2.9 9.4 1.0
CG B:ASP211 3.0 9.5 1.0
PB B:UDP475 3.1 10.1 1.0
PA B:UDP475 3.3 10.8 1.0
O3A B:UDP475 3.4 10.9 1.0
CB B:ASP211 3.5 9.3 1.0
O3' B:UDP475 4.0 8.0 1.0
OD1 B:ASP211 4.0 10.3 1.0
O3B B:UDP475 4.1 10.3 1.0
O2A B:UDP475 4.1 10.3 1.0
NZ B:LYS346 4.2 15.1 1.0
O2B B:UDP475 4.2 10.2 1.0
CB B:ASP213 4.3 8.9 1.0
O5' B:UDP475 4.4 9.8 1.0
O B:HOH2028 4.5 14.5 1.0
C5' B:UDP475 4.6 9.4 1.0
C3' B:UDP475 4.8 8.8 1.0
CE B:LYS346 4.8 15.1 1.0
CA B:ASP211 4.9 8.3 1.0
N B:ASP213 5.0 8.4 1.0
SD B:MET214 5.0 11.4 1.0

Reference:

J.T.Weadge, M.Palcic, A.Henriksen. Structural and Biochemical Characterization of the Human Blood Group A and B Galactosyltransferases Posessing the PRO156LEU Mutation To Be Published.
Page generated: Tue Dec 15 04:18:40 2020

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