Manganese in PDB 4b02: The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase

Enzymatic activity of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase

All present enzymatic activity of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase:
2.7.7.48;

Protein crystallography data

The structure of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase, PDB code: 4b02 was solved by L.P.Sarin, S.Wright, Q.Chen, L.H.Degerth, D.I.Stuart, J.M.Grimes, D.H.Bamford, M.M.Poranen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.39 / 3.30
*Space group*	P 3₂
*Cell size a, b, c (Å), α, β, γ (°)*	105.070, 105.070, 157.530, 90.00, 90.00, 120.00
*R / R_free (%)*	21.85 / 24.19

Manganese Binding Sites:

The binding sites of Manganese atom in the The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase (pdb code 4b02). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase, PDB code: 4b02:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 4b02

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Manganese Binding Sites List in 4b02

Manganese binding site 1 out of 3 in the The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn665 b:0.0 occ:1.00	OE1	A:GLU491	2.1	51.6	1.0
	OD1	A:ASP454	2.2	62.0	1.0
	O	A:ALA495	2.3	51.0	1.0
	CD	A:GLU491	3.1	56.3	1.0
	CG	A:ASP454	3.2	65.8	1.0
	C	A:ALA495	3.5	49.7	1.0
	OE2	A:GLU491	3.5	61.2	1.0
	OD2	A:ASP454	3.7	62.4	1.0
	O	A:THR323	3.9	65.8	1.0
	N	A:ALA495	4.2	46.2	1.0
	CG	A:GLU491	4.3	56.8	1.0
	CA	A:ALA495	4.3	46.1	1.0
	N	A:PHE496	4.4	41.7	1.0
	O	A:ALA455	4.4	56.7	1.0
	CA	A:PHE496	4.4	41.2	1.0
	CB	A:ASP454	4.4	61.5	1.0
	CB	A:GLU491	4.5	58.5	1.0
	N	A:ALA455	4.6	57.0	1.0
	CA	A:ASP454	4.6	61.0	1.0
	CB	A:ALA495	4.8	47.2	1.0
	CB	A:ALA322	5.0	58.4	1.0

Manganese binding site 2 out of 3 in 4b02

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Manganese Binding Sites List in 4b02

Manganese binding site 2 out of 3 in the The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn665 b:1.0 occ:1.00	OE1	B:GLU491	2.1	52.3	1.0
	OD1	B:ASP454	2.2	73.3	1.0
	O	B:ALA495	2.3	61.2	1.0
	CD	B:GLU491	3.1	57.0	1.0
	CG	B:ASP454	3.2	77.2	1.0
	C	B:ALA495	3.5	60.0	1.0
	OE2	B:GLU491	3.5	61.9	1.0
	OD2	B:ASP454	3.7	73.7	1.0
	O	B:THR323	3.9	80.4	1.0
	N	B:ALA495	4.2	56.5	1.0
	CG	B:GLU491	4.3	57.5	1.0
	CA	B:ALA495	4.4	56.4	1.0
	N	B:PHE496	4.4	56.8	1.0
	CB	B:ASP454	4.4	72.9	1.0
	CA	B:PHE496	4.4	56.3	1.0
	O	B:ALA455	4.5	70.5	1.0
	CB	B:GLU491	4.5	59.2	1.0
	N	B:ALA455	4.6	70.8	1.0
	CA	B:ASP454	4.6	72.4	1.0
	CB	B:ALA495	4.8	57.4	1.0
	CB	B:ALA322	5.0	75.5	1.0

Manganese binding site 3 out of 3 in 4b02

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Manganese Binding Sites List in 4b02

Manganese binding site 3 out of 3 in the The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mn665 b:0.2 occ:1.00	OE1	C:GLU491	2.1	76.6	1.0
	OD1	C:ASP454	2.2	73.0	1.0
	O	C:ALA495	2.3	87.3	1.0
	CD	C:GLU491	3.1	81.3	1.0
	CG	C:ASP454	3.2	76.8	1.0
	C	C:ALA495	3.5	86.0	1.0
	OE2	C:GLU491	3.5	86.2	1.0
	OD2	C:ASP454	3.7	73.3	1.0
	O	C:THR323	3.9	93.4	1.0
	N	C:ALA495	4.2	82.5	1.0
	CG	C:GLU491	4.3	81.8	1.0
	CA	C:ALA495	4.4	82.4	1.0
	O	C:ALA455	4.4	69.1	1.0
	N	C:PHE496	4.4	81.2	1.0
	CA	C:PHE496	4.4	80.7	1.0
	CB	C:ASP454	4.5	72.5	1.0
	CB	C:GLU491	4.5	83.5	1.0
	N	C:ALA455	4.6	69.4	1.0
	CA	C:ASP454	4.6	72.0	1.0
	CB	C:ALA495	4.8	83.5	1.0
	CB	C:ALA322	5.0	89.6	1.0

Reference:

L.P.Sarin, S.Wright, Q.Chen, L.H.Degerth, D.I.Stuart, J.M.Grimes, D.H.Bamford, M.M.Poranen. The C-Terminal Priming Domain Is Strongly Associated with the Main Body of Bacteriophage PHI6 Rna-Dependent Rna Polymerase. Virology V. 432 184 2012.
ISSN: ISSN 0042-6822
PubMed: 22770923
DOI: 10.1016/J.VIROL.2012.05.035

Page generated: Sat Oct 5 18:47:47 2024

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