Manganese in PDB 3zy2: Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset)

All present enzymatic activity of Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset):
2.4.1.221;

The structure of Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset), PDB code: 3zy2 was solved by E.Lira-Navarrete, J.Valero-Gonzalez, R.Villanueva, M.Martinez-Julvez, T.Tejero, P.Merino, S.Panjikar, R.Hurtado-Guerrero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.63 / 1.54
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	145.018, 38.247, 68.196, 90.00, 103.07, 90.00
R / Rfree (%)	20.507 / 23.725

The binding sites of Manganese atom in the Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset) (pdb code 3zy2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset), PDB code: 3zy2:

Manganese binding site 1 out of 1 in the Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of POFUT1 in Complex with Gdp (High Resolution Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1380 b:14.9 occ:0.50 O1B A:GDP1381 2.0 9.9 0.5 O3B A:GDP1381 2.1 23.2 0.5 O A:HOH2017 2.3 19.2 1.0 O2A A:GDP1381 2.8 10.0 0.5 PB A:GDP1381 3.3 29.7 0.5 PB A:GDP1381 3.4 9.4 0.5 O2B A:GDP1381 3.5 22.4 0.5 O5' A:GDP1381 3.6 24.3 0.5 O3A A:GDP1381 3.6 9.4 0.5 O2B A:GDP1381 3.7 8.7 0.5 O5' A:GDP1381 3.7 13.4 0.5 PA A:GDP1381 3.8 14.2 0.5 NH2 A:ARG240 3.9 20.2 1.0 O2A A:GDP1381 3.9 10.5 0.5 PA A:GDP1381 4.1 25.8 0.5 O3A A:GDP1381 4.2 15.8 0.5 ND2 A:ASN43 4.3 15.0 1.0 OD1 A:ASN43 4.3 15.7 1.0 O3B A:GDP1381 4.5 9.4 0.5 O1B A:GDP1381 4.6 17.0 0.5 CG A:ASN43 4.6 15.1 1.0 C5' A:GDP1381 4.7 20.9 0.5 C5' A:GDP1381 4.7 12.1 0.5 CE2 A:PHE261 4.7 26.4 1.0 CZ A:PHE261 4.9 27.7 1.0 NH1 A:ARG40 5.0 27.4 1.0

E.Lira-Navarrete, J.Valero-Gonzalez, R.Villanueva, M.Martinez-Julvez, T.Tejero, P.Merino, S.Panjikar, R.Hurtado-Guerrero. Structural Insights Into the Mechanism of Protein O-Fucosylation. Plos One V. 6 25365 2011.
ISSN: ISSN 1932-6203
PubMed: 21966509
DOI: 10.1371/JOURNAL.PONE.0025365