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Manganese in PDB 3zvn: The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase

Enzymatic activity of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase

All present enzymatic activity of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase:
2.7.1.78; 3.1.3.32;

Protein crystallography data

The structure of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase, PDB code: 3zvn was solved by F.Garces, L.H.Pearl, A.W.Oliver, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.50 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.270, 72.990, 114.440, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 26.9

Manganese Binding Sites:

The binding sites of Manganese atom in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase (pdb code 3zvn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase, PDB code: 3zvn:

Manganese binding site 1 out of 1 in 3zvn

Go back to Manganese Binding Sites List in 3zvn
Manganese binding site 1 out of 1 in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn901

b:28.8
occ:1.00
 O1B A:ADP1524 2.1 28.5 1.0
OG A:SER378 2.2 31.2 1.0
O A:HOH2208 2.3 26.2 1.0
O A:HOH2104 2.3 31.9 1.0
O A:HOH2106 2.4 22.0 1.0
O A:HOH2105 2.5 29.7 1.0
CB A:SER378 3.2 28.2 1.0
PB A:ADP1524 3.3 28.1 1.0
O2B A:ADP1524 3.5 28.3 1.0
N A:SER378 3.9 27.9 1.0
O A:HOH2120 3.9 29.6 1.0
OP1 E:DG1 3.9 53.8 1.0
O2A A:ADP1524 4.0 30.6 1.0
O A:HOH2103 4.0 44.9 1.0
CA A:SER378 4.1 28.7 1.0
OD2 A:ASP421 4.2 30.7 1.0
OD1 A:ASP421 4.3 25.6 1.0
O A:HOH2102 4.3 28.1 1.0
O3B A:ADP1524 4.3 25.4 1.0
O3A A:ADP1524 4.4 28.6 1.0
PA A:ADP1524 4.6 28.6 1.0
OD2 A:ASP396 4.6 43.6 1.0
CG A:ASP421 4.6 30.7 1.0
O A:HOH2176 4.9 52.7 1.0
O1A A:ADP1524 4.9 24.8 1.0
NH2 A:ARG463 4.9 37.9 1.0

Reference:

F.Garces, L.H.Pearl, A.W.Oliver. The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase. Mol. Cell V. 44 385 2011.
ISSN: ISSN 1097-4164
PubMed: 22055185
DOI: 10.1016/J.MOLCEL.2011.08.036
Page generated: Sat Oct 5 18:42:20 2024

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