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Manganese in PDB 3zgg: Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group)

Enzymatic activity of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group)

All present enzymatic activity of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group):
2.4.1.37; 2.4.1.40;

Protein crystallography data

The structure of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group), PDB code: 3zgg was solved by R.Jorgensen, G.O.Batot, O.Hindsgaul, H.Tanaka, S.Perez, A.Imberty, C.Breton, A.Royant, M.M.Palcic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.18 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.687, 150.730, 79.359, 90.00, 90.00, 90.00
R / Rfree (%) 18.354 / 22.615

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group) (pdb code 3zgg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group), PDB code: 3zgg:

Manganese binding site 1 out of 1 in 3zgg

Go back to Manganese Binding Sites List in 3zgg
Manganese binding site 1 out of 1 in the Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266G, G268A) in Complex with Npe Caged Udp-Gal (C222(1) Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1348

b:28.7
occ:1.00
 O A:HOH2078 2.1 27.1 1.0
OAL A:IUG1346 2.1 25.2 1.0
OAE A:IUG1346 2.2 31.7 1.0
OD2 A:ASP211 2.2 24.9 1.0
OD1 A:ASP213 2.4 22.5 1.0
OD2 A:ASP213 2.5 26.4 1.0
CG A:ASP213 2.8 23.4 1.0
CG A:ASP211 3.3 22.4 1.0
PBS A:IUG1346 3.4 26.9 1.0
PBT A:IUG1346 3.4 29.9 1.0
CB A:ASP211 3.7 20.7 1.0
OBC A:IUG1346 3.7 28.2 1.0
O3' A:IUG1346 3.8 19.4 1.0
O1 A:IUG1346 4.2 34.7 1.0
C5' A:IUG1346 4.3 24.0 1.0
CB A:ASP213 4.3 21.4 1.0
OD1 A:ASP211 4.4 23.5 1.0
O5' A:IUG1346 4.4 24.9 1.0
OAD A:IUG1346 4.5 26.0 1.0
C3' A:IUG1346 4.5 21.4 1.0
OAM A:IUG1346 4.6 33.2 1.0
O A:ASP213 4.8 19.8 1.0
C4' A:IUG1346 4.8 23.2 1.0
SD A:MET214 5.0 28.2 1.0

Reference:

R.Jorgensen, G.Batot, K.Mannerstedt, A.Imberty, C.Breton, O.Hindsgaul, A.Royant, M.M.Palcic. Structures of A Human Blood Group Glycosyltransferase in Complex with A Photo-Activatable Udp-Gal Derivative Reveal Two Different Binding Conformations Acta Crystallogr.,Sect.F V. 70 1015 2014.
ISSN: ISSN 1744-3091
PubMed: 25084373
DOI: 10.1107/S2053230X1401259X
Page generated: Tue Dec 15 04:17:54 2020

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