Manganese in PDB 3zf8: Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn.

The structure of Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn., PDB code: 3zf8 was solved by A.Striebeck, A.W.Schuettelkopf, D.M.F.Van Aalten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.15 / 1.98
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	57.090, 57.090, 330.910, 90.00, 90.00, 120.00
R / Rfree (%)	18.966 / 23.92

The binding sites of Manganese atom in the Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn. (pdb code 3zf8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn., PDB code: 3zf8:

Manganese binding site 1 out of 1 in the Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Saccharomyces Cerevisiae MNN9 in Complex with Gdp and Mn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1396 b:43.9 occ:1.00 O1B A:GDP1395 2.2 36.5 1.0 OD2 A:ASP238 2.3 30.6 1.0 NE2 A:HIS389 2.3 10.0 1.0 O3A A:GDP1395 2.4 40.3 1.0 PB A:GDP1395 2.8 42.5 1.0 O A:HOH2147 2.9 33.4 1.0 CG A:ASP238 3.0 26.3 1.0 CE1 A:HIS389 3.2 9.7 1.0 CD2 A:HIS389 3.3 10.2 1.0 OD1 A:ASP238 3.6 28.5 1.0 O2B A:GDP1395 3.6 37.4 1.0 PA A:GDP1395 3.8 34.2 1.0 OH A:TYR279 3.9 20.0 1.0 CB A:ASP238 3.9 19.6 1.0 O5' A:GDP1395 4.0 34.0 1.0 O3B A:GDP1395 4.1 43.3 1.0 O2A A:GDP1395 4.3 33.7 1.0 ND1 A:HIS389 4.4 9.7 1.0 O A:HOH2083 4.4 19.0 1.0 CG A:HIS389 4.5 9.9 1.0 CZ A:TYR279 4.7 17.2 1.0 CE2 A:TYR279 4.7 16.7 1.0 C5' A:GDP1395 4.8 26.5 1.0 O1A A:GDP1395 4.9 42.0 1.0

A.Striebeck, D.A.Robinson, A.W.Schuettelkopf, D.M.F.Van Aalten. Yeast MNN9 Is Both A Priming Glycosyltransferase and An Allosteric Activator of Mannan Biosynthesis. Open Biol. V. 3 30022 2013.
ISSN: ISSN 2046-2441
PubMed: 24026536
DOI: 10.1098/RSOB.130022