Manganese in PDB 3ww3: X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand

The structure of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand, PDB code: 3ww3 was solved by Y.Terami, H.Yoshida, G.Takata, S.Kamitori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.19 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	76.520, 89.070, 152.580, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 21.9

The binding sites of Manganese atom in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand (pdb code 3ww3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand, PDB code: 3ww3:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:20.5 occ:1.00 NE2 A:HIS108 2.2 19.6 1.0 O A:HOH501 2.2 24.8 1.0 NE2 A:HIS106 2.2 17.5 1.0 O A:HOH502 2.3 27.9 1.0 OE2 A:GLU113 2.3 27.8 1.0 NE2 A:HIS188 2.3 20.8 1.0 CD A:GLU113 3.0 24.8 1.0 CD2 A:HIS108 3.1 16.1 1.0 CE1 A:HIS188 3.1 19.1 1.0 CE1 A:HIS106 3.1 20.4 1.0 CE1 A:HIS108 3.2 17.2 1.0 OE1 A:GLU113 3.2 25.8 1.0 CD2 A:HIS106 3.3 18.4 1.0 CD2 A:HIS188 3.5 18.8 1.0 NZ A:LYS111 4.2 23.1 1.0 CG A:HIS108 4.2 17.8 1.0 ND1 A:HIS108 4.3 17.2 1.0 ND1 A:HIS106 4.3 19.1 1.0 ND1 A:HIS188 4.3 17.0 1.0 CG A:HIS106 4.4 19.5 1.0 CG A:GLU113 4.4 22.9 1.0 CE A:LYS111 4.4 21.9 1.0 CG A:HIS188 4.5 16.7 1.0

Manganese binding site 2 out of 2 in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with No Ligand within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:21.7 occ:1.00 NE2 B:HIS108 2.1 18.0 1.0 O B:HOH501 2.2 29.3 1.0 OE2 B:GLU113 2.2 23.8 1.0 NE2 B:HIS106 2.3 18.2 1.0 O B:HOH502 2.4 30.4 1.0 NE2 B:HIS188 2.4 21.8 1.0 CD B:GLU113 3.0 22.9 1.0 CD2 B:HIS108 3.1 16.9 1.0 CE1 B:HIS106 3.1 19.3 1.0 CE1 B:HIS108 3.1 17.4 1.0 OE1 B:GLU113 3.2 25.2 1.0 CE1 B:HIS188 3.2 23.3 1.0 CD2 B:HIS106 3.4 20.2 1.0 CD2 B:HIS188 3.5 22.2 1.0 CG B:HIS108 4.2 19.9 1.0 ND1 B:HIS108 4.2 19.6 1.0 ND1 B:HIS106 4.3 18.4 1.0 NZ B:LYS111 4.3 20.9 1.0 CG B:GLU113 4.4 22.1 1.0 CE B:LYS111 4.4 20.8 1.0 ND1 B:HIS188 4.4 20.5 1.0 CG B:HIS106 4.4 19.1 1.0 CG B:HIS188 4.6 19.9 1.0

Y.Terami, H.Yoshida, K.Uechi, K.Morimoto, G.Takata, S.Kamitori. Essentiality of Tetramer Formation of Cellulomonas Parahominis L-Ribose Isomerase Involved in Novel L-Ribose Metabolic Pathway. Appl.Microbiol.Biotechnol. 2015.
ISSN: ESSN 1432-0614
PubMed: 25661811
DOI: 10.1007/S00253-015-6417-4