Manganese in PDB 3ww2: X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose

The structure of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose, PDB code: 3ww2 was solved by Y.Terami, H.Yoshida, G.Takata, S.Kamitori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.80 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	76.780, 88.200, 151.100, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 26.1

The binding sites of Manganese atom in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose (pdb code 3ww2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose, PDB code: 3ww2:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:44.6 occ:1.00 NE2 A:HIS108 2.2 29.9 1.0 O2 A:SF6402 2.3 45.3 0.8 OE2 A:GLU113 2.3 47.2 1.0 NE2 A:HIS106 2.3 31.3 1.0 NE2 A:HIS188 2.4 34.8 1.0 O1 A:SF6402 2.4 46.8 0.8 CE1 A:HIS188 3.0 34.7 1.0 CD A:GLU113 3.1 45.9 1.0 C2 A:SF6402 3.1 47.4 0.8 CD2 A:HIS108 3.1 28.0 1.0 CE1 A:HIS108 3.2 27.7 1.0 OE1 A:GLU113 3.2 46.6 1.0 C1 A:SF6402 3.2 47.4 0.8 O5 A:SF6402 3.2 49.0 0.8 CE1 A:HIS106 3.2 34.7 1.0 CD2 A:HIS106 3.3 31.1 1.0 CD2 A:HIS188 3.6 31.4 1.0 NZ A:LYS111 4.1 36.0 1.0 CG A:HIS108 4.3 31.3 1.0 CE A:LYS111 4.3 33.8 1.0 ND1 A:HIS108 4.3 31.6 1.0 ND1 A:HIS188 4.3 34.4 1.0 ND1 A:HIS106 4.4 32.6 1.0 CG A:GLU113 4.4 42.1 1.0 CG A:HIS106 4.5 33.5 1.0 C5 A:SF6402 4.5 49.8 0.8 C3 A:SF6402 4.5 48.3 0.8 CG A:HIS188 4.6 32.0 1.0 OH A:TYR115 4.7 44.0 1.0 O3 A:SF6402 4.8 45.3 0.8 OE1 A:GLU204 4.9 44.9 1.0

Manganese binding site 2 out of 2 in the X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structures of Cellulomonas Parahominis L-Ribose Isomerase with L-Psicose within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:40.9 occ:1.00 NE2 B:HIS108 2.1 27.6 1.0 O2 B:LPK402 2.3 65.0 1.0 NE2 B:HIS106 2.4 38.8 1.0 OE2 B:GLU113 2.5 48.3 1.0 O1 B:LPK402 2.5 60.9 1.0 NE2 B:HIS188 2.6 38.8 1.0 CD2 B:HIS108 3.1 25.1 1.0 CE1 B:HIS108 3.1 25.2 1.0 CD B:GLU113 3.1 46.8 1.0 C2 B:LPK402 3.2 63.4 1.0 OE1 B:GLU113 3.2 46.5 1.0 CD2 B:HIS106 3.3 38.0 1.0 C1 B:LPK402 3.4 62.1 1.0 CE1 B:HIS188 3.4 38.0 1.0 CE1 B:HIS106 3.4 37.6 1.0 CD2 B:HIS188 3.6 36.9 1.0 O4 B:LPK402 3.9 63.4 1.0 NZ B:LYS111 4.0 38.6 1.0 ND1 B:HIS108 4.2 25.8 1.0 CG B:HIS108 4.2 28.3 1.0 CE B:LYS111 4.3 36.8 1.0 C3 B:LPK402 4.5 63.9 1.0 CG B:HIS106 4.5 37.5 1.0 ND1 B:HIS106 4.5 38.4 1.0 CG B:GLU113 4.5 42.7 1.0 ND1 B:HIS188 4.5 36.4 1.0 C4 B:LPK402 4.6 64.9 1.0 CG B:HIS188 4.7 36.0 1.0 OH B:TYR115 4.7 41.1 1.0

Y.Terami, H.Yoshida, K.Uechi, K.Morimoto, G.Takata, S.Kamitori. Essentiality of Tetramer Formation of Cellulomonas Parahominis L-Ribose Isomerase Involved in Novel L-Ribose Metabolic Pathway. Appl.Microbiol.Biotechnol. 2015.
ISSN: ESSN 1432-0614
PubMed: 25661811
DOI: 10.1007/S00253-015-6417-4