Manganese in PDB 3wu2: Crystal Structure Analysis of Photosystem II Complex
Protein crystallography data
The structure of Crystal Structure Analysis of Photosystem II Complex, PDB code: 3wu2
was solved by
Y.Umena,
K.Kawakami,
J.R.Shen,
N.Kamiya,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.190,
228.510,
286.400,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.6 /
19.4
|
Other elements in 3wu2:
The structure of Crystal Structure Analysis of Photosystem II Complex also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure Analysis of Photosystem II Complex
(pdb code 3wu2). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Crystal Structure Analysis of Photosystem II Complex, PDB code: 3wu2:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 1 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:22.3
occ:1.00
|
MN1
|
A:OEX401
|
0.0
|
22.3
|
1.0
|
|
O3
|
A:OEX401
|
1.8
|
23.1
|
1.0
|
|
O1
|
A:OEX401
|
1.9
|
21.8
|
1.0
|
|
OE2
|
A:GLU189
|
1.9
|
25.3
|
1.0
|
|
NE2
|
A:HIS332
|
2.1
|
19.5
|
1.0
|
|
OD2
|
A:ASP342
|
2.2
|
24.2
|
1.0
|
|
O5
|
A:OEX401
|
2.6
|
23.5
|
1.0
|
|
MN2
|
A:OEX401
|
2.9
|
23.1
|
1.0
|
|
CD
|
A:GLU189
|
2.9
|
24.6
|
1.0
|
|
CD2
|
A:HIS332
|
3.0
|
18.9
|
1.0
|
|
CE1
|
A:HIS332
|
3.1
|
24.7
|
1.0
|
|
CG
|
A:ASP342
|
3.1
|
22.8
|
1.0
|
|
MN3
|
A:OEX401
|
3.3
|
23.4
|
1.0
|
|
OD1
|
A:ASP342
|
3.4
|
20.5
|
1.0
|
|
OE1
|
A:GLU189
|
3.4
|
27.3
|
1.0
|
|
CA1
|
A:OEX401
|
3.5
|
25.2
|
1.0
|
|
O2
|
A:OEX401
|
3.8
|
25.9
|
1.0
|
|
NE2
|
A:HIS337
|
3.9
|
22.3
|
1.0
|
|
O
|
A:HOH597
|
4.0
|
38.0
|
1.0
|
|
OE1
|
A:GLU333
|
4.0
|
24.0
|
1.0
|
|
O
|
A:HOH658
|
4.1
|
39.8
|
1.0
|
|
CG
|
A:GLU189
|
4.1
|
25.5
|
1.0
|
|
ND1
|
A:HIS332
|
4.2
|
18.6
|
1.0
|
|
CG
|
A:HIS332
|
4.2
|
19.1
|
1.0
|
|
CG1
|
A:VAL185
|
4.5
|
21.6
|
1.0
|
|
OXT
|
A:ALA344
|
4.5
|
25.2
|
1.0
|
|
CB
|
A:ASP342
|
4.5
|
21.1
|
1.0
|
|
OE1
|
C:GLU354
|
4.5
|
23.3
|
1.0
|
|
CE1
|
A:HIS337
|
4.6
|
20.5
|
1.0
|
|
O
|
A:HOH569
|
4.7
|
26.4
|
1.0
|
|
OE2
|
C:GLU354
|
4.7
|
23.3
|
1.0
|
|
CD
|
A:GLU333
|
4.8
|
20.7
|
1.0
|
|
O
|
A:HOH544
|
4.9
|
27.3
|
1.0
|
|
O
|
A:ALA344
|
4.9
|
29.0
|
1.0
|
|
CD2
|
A:HIS337
|
5.0
|
20.1
|
1.0
|
|
MN4
|
A:OEX401
|
5.0
|
27.0
|
1.0
|
|
Manganese binding site 2 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 2 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:23.1
occ:1.00
|
MN2
|
A:OEX401
|
0.0
|
23.1
|
1.0
|
|
OXT
|
A:ALA344
|
2.0
|
25.2
|
1.0
|
|
O1
|
A:OEX401
|
2.1
|
21.8
|
1.0
|
|
OE1
|
C:GLU354
|
2.1
|
23.3
|
1.0
|
|
O3
|
A:OEX401
|
2.1
|
23.1
|
1.0
|
|
OD1
|
A:ASP342
|
2.2
|
20.5
|
1.0
|
|
O2
|
A:OEX401
|
2.2
|
25.9
|
1.0
|
|
MN1
|
A:OEX401
|
2.9
|
22.3
|
1.0
|
|
MN3
|
A:OEX401
|
2.9
|
23.4
|
1.0
|
|
C
|
A:ALA344
|
3.0
|
26.3
|
1.0
|
|
CD
|
C:GLU354
|
3.0
|
23.2
|
1.0
|
|
CG
|
A:ASP342
|
3.1
|
22.8
|
1.0
|
|
OD2
|
A:ASP342
|
3.2
|
24.2
|
1.0
|
|
OE2
|
C:GLU354
|
3.2
|
23.3
|
1.0
|
|
O
|
A:ALA344
|
3.3
|
29.0
|
1.0
|
|
CA1
|
A:OEX401
|
3.4
|
25.2
|
1.0
|
|
O5
|
A:OEX401
|
3.8
|
23.5
|
1.0
|
|
NE2
|
A:HIS337
|
3.8
|
22.3
|
1.0
|
|
O
|
C:HOH701
|
3.9
|
25.7
|
1.0
|
|
O
|
A:HOH597
|
4.1
|
38.0
|
1.0
|
|
CA
|
A:ALA344
|
4.3
|
25.4
|
1.0
|
|
N
|
A:ALA344
|
4.3
|
27.7
|
1.0
|
|
CD2
|
A:HIS337
|
4.3
|
20.1
|
1.0
|
|
CG
|
C:GLU354
|
4.4
|
21.1
|
1.0
|
|
OE2
|
A:GLU189
|
4.4
|
25.3
|
1.0
|
|
CB
|
A:ASP342
|
4.5
|
21.1
|
1.0
|
|
O4
|
A:OEX401
|
4.5
|
28.5
|
1.0
|
|
OE1
|
A:GLU333
|
4.5
|
24.0
|
1.0
|
|
NE2
|
A:HIS332
|
4.6
|
19.5
|
1.0
|
|
NH2
|
C:ARG357
|
4.7
|
24.0
|
1.0
|
|
CB
|
C:GLU354
|
4.8
|
24.0
|
1.0
|
|
CA
|
A:ASP342
|
4.8
|
23.1
|
1.0
|
|
NH1
|
C:ARG357
|
4.9
|
27.6
|
1.0
|
|
O
|
A:HOH544
|
4.9
|
27.3
|
1.0
|
|
C
|
A:ASP342
|
4.9
|
22.8
|
1.0
|
|
Manganese binding site 3 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 3 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:23.4
occ:1.00
|
MN3
|
A:OEX401
|
0.0
|
23.4
|
1.0
|
|
O2
|
A:OEX401
|
1.9
|
25.9
|
1.0
|
|
OE1
|
A:GLU333
|
2.0
|
24.0
|
1.0
|
|
O4
|
A:OEX401
|
2.1
|
28.5
|
1.0
|
|
OE2
|
C:GLU354
|
2.2
|
23.3
|
1.0
|
|
O3
|
A:OEX401
|
2.2
|
23.1
|
1.0
|
|
O5
|
A:OEX401
|
2.3
|
23.5
|
1.0
|
|
MN2
|
A:OEX401
|
2.9
|
23.1
|
1.0
|
|
MN4
|
A:OEX401
|
3.0
|
27.0
|
1.0
|
|
CD
|
A:GLU333
|
3.0
|
20.7
|
1.0
|
|
CD
|
C:GLU354
|
3.1
|
23.2
|
1.0
|
|
MN1
|
A:OEX401
|
3.3
|
22.3
|
1.0
|
|
OE2
|
A:GLU333
|
3.3
|
22.2
|
1.0
|
|
OE1
|
C:GLU354
|
3.4
|
23.3
|
1.0
|
|
CA1
|
A:OEX401
|
3.4
|
25.2
|
1.0
|
|
O1
|
A:OEX401
|
3.5
|
21.8
|
1.0
|
|
O
|
C:HOH633
|
4.0
|
24.1
|
1.0
|
|
NH2
|
C:ARG357
|
4.0
|
24.0
|
1.0
|
|
NE2
|
A:HIS337
|
4.1
|
22.3
|
1.0
|
|
OD1
|
A:ASP170
|
4.1
|
25.6
|
1.0
|
|
NE2
|
A:HIS332
|
4.2
|
19.5
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
21.7
|
1.0
|
|
O
|
A:HOH511
|
4.4
|
23.5
|
1.0
|
|
CD2
|
A:HIS332
|
4.4
|
18.9
|
1.0
|
|
OD2
|
A:ASP170
|
4.4
|
25.3
|
1.0
|
|
OXT
|
A:ALA344
|
4.4
|
25.2
|
1.0
|
|
CG
|
C:GLU354
|
4.6
|
21.1
|
1.0
|
|
O
|
A:HOH624
|
4.7
|
27.6
|
1.0
|
|
CE1
|
A:HIS337
|
4.7
|
20.5
|
1.0
|
|
OD1
|
A:ASP342
|
4.7
|
20.5
|
1.0
|
|
CG
|
A:ASP170
|
4.7
|
24.5
|
1.0
|
|
O
|
A:HOH595
|
4.7
|
22.9
|
1.0
|
|
CB
|
A:GLU333
|
4.8
|
21.6
|
1.0
|
|
O
|
A:ALA344
|
4.8
|
29.0
|
1.0
|
|
OD2
|
A:ASP342
|
4.8
|
24.2
|
1.0
|
|
O
|
A:HOH569
|
4.9
|
26.4
|
1.0
|
|
OE2
|
A:GLU189
|
4.9
|
25.3
|
1.0
|
|
Manganese binding site 4 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 4 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:27.0
occ:1.00
|
MN4
|
A:OEX401
|
0.0
|
27.0
|
1.0
|
|
OD1
|
A:ASP170
|
2.1
|
25.6
|
1.0
|
|
O4
|
A:OEX401
|
2.1
|
28.5
|
1.0
|
|
O
|
A:HOH624
|
2.1
|
27.6
|
1.0
|
|
OE2
|
A:GLU333
|
2.2
|
22.2
|
1.0
|
|
O
|
A:HOH595
|
2.3
|
22.9
|
1.0
|
|
O5
|
A:OEX401
|
2.4
|
23.5
|
1.0
|
|
MN3
|
A:OEX401
|
3.0
|
23.4
|
1.0
|
|
CD
|
A:GLU333
|
3.1
|
20.7
|
1.0
|
|
CG
|
A:ASP170
|
3.2
|
24.5
|
1.0
|
|
OE1
|
A:GLU333
|
3.3
|
24.0
|
1.0
|
|
O
|
A:HOH569
|
3.8
|
26.4
|
1.0
|
|
OD2
|
A:ASP170
|
3.8
|
25.3
|
1.0
|
|
CA1
|
A:OEX401
|
3.8
|
25.2
|
1.0
|
|
O2
|
A:OEX401
|
3.8
|
25.9
|
1.0
|
|
O
|
A:HOH609
|
3.9
|
28.4
|
1.0
|
|
O
|
A:HOH511
|
4.0
|
23.5
|
1.0
|
|
O
|
A:HOH509
|
4.1
|
30.6
|
1.0
|
|
OD1
|
A:ASP61
|
4.2
|
22.9
|
1.0
|
|
O
|
A:SER169
|
4.4
|
21.1
|
1.0
|
|
CB
|
A:ASP170
|
4.4
|
23.4
|
1.0
|
|
CG
|
A:GLU333
|
4.4
|
21.7
|
1.0
|
|
CA
|
A:ASP170
|
4.6
|
23.5
|
1.0
|
|
NH2
|
C:ARG357
|
4.7
|
24.0
|
1.0
|
|
O
|
A:HOH621
|
4.7
|
25.3
|
1.0
|
|
O3
|
A:OEX401
|
4.8
|
23.1
|
1.0
|
|
OE2
|
C:GLU354
|
4.8
|
23.3
|
1.0
|
|
C
|
A:SER169
|
4.9
|
20.2
|
1.0
|
|
N
|
A:ASP170
|
5.0
|
21.8
|
1.0
|
|
MN1
|
A:OEX401
|
5.0
|
22.3
|
1.0
|
|
Manganese binding site 5 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 5 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn404
b:25.9
occ:1.00
|
MN1
|
a:OEX404
|
0.0
|
25.9
|
1.0
|
|
OE2
|
a:GLU189
|
1.7
|
24.2
|
1.0
|
|
O1
|
a:OEX404
|
1.8
|
22.8
|
1.0
|
|
O3
|
a:OEX404
|
1.9
|
26.8
|
1.0
|
|
NE2
|
a:HIS332
|
2.2
|
26.0
|
1.0
|
|
OD2
|
a:ASP342
|
2.3
|
25.1
|
1.0
|
|
O5
|
a:OEX404
|
2.7
|
28.2
|
1.0
|
|
MN2
|
a:OEX404
|
2.8
|
26.4
|
1.0
|
|
CD
|
a:GLU189
|
2.8
|
27.7
|
1.0
|
|
CE1
|
a:HIS332
|
3.1
|
24.8
|
1.0
|
|
CG
|
a:ASP342
|
3.1
|
21.9
|
1.0
|
|
CD2
|
a:HIS332
|
3.2
|
22.9
|
1.0
|
|
MN3
|
a:OEX404
|
3.3
|
25.1
|
1.0
|
|
OE1
|
a:GLU189
|
3.3
|
30.1
|
1.0
|
|
OD1
|
a:ASP342
|
3.3
|
24.6
|
1.0
|
|
CA1
|
a:OEX404
|
3.5
|
27.7
|
1.0
|
|
O2
|
a:OEX404
|
3.6
|
27.6
|
1.0
|
|
NE2
|
a:HIS337
|
3.9
|
28.7
|
1.0
|
|
OE1
|
a:GLU333
|
4.0
|
28.5
|
1.0
|
|
O
|
a:HOH609
|
4.1
|
33.4
|
1.0
|
|
CG
|
a:GLU189
|
4.1
|
28.5
|
1.0
|
|
ND1
|
a:HIS332
|
4.2
|
23.8
|
1.0
|
|
OXT
|
a:ALA344
|
4.3
|
33.3
|
1.0
|
|
O
|
a:HOH639
|
4.3
|
39.6
|
1.0
|
|
CG
|
a:HIS332
|
4.3
|
23.7
|
1.0
|
|
OE1
|
c:GLU354
|
4.5
|
25.9
|
1.0
|
|
CB
|
a:ASP342
|
4.5
|
23.4
|
1.0
|
|
CG1
|
a:VAL185
|
4.5
|
22.7
|
1.0
|
|
CE1
|
a:HIS337
|
4.6
|
28.6
|
1.0
|
|
OE2
|
c:GLU354
|
4.6
|
25.1
|
1.0
|
|
O
|
a:HOH585
|
4.7
|
28.8
|
1.0
|
|
O
|
a:ALA344
|
4.7
|
30.3
|
1.0
|
|
CD
|
a:GLU333
|
4.7
|
27.9
|
1.0
|
|
C
|
a:ALA344
|
4.9
|
33.8
|
1.0
|
|
O
|
a:HOH515
|
4.9
|
28.9
|
1.0
|
|
CD2
|
a:HIS337
|
4.9
|
24.6
|
1.0
|
|
MN4
|
a:OEX404
|
4.9
|
29.5
|
1.0
|
|
CD
|
c:GLU354
|
5.0
|
26.9
|
1.0
|
|
Manganese binding site 6 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 6 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn404
b:26.4
occ:1.00
|
MN2
|
a:OEX404
|
0.0
|
26.4
|
1.0
|
|
OXT
|
a:ALA344
|
1.8
|
33.3
|
1.0
|
|
O2
|
a:OEX404
|
2.0
|
27.6
|
1.0
|
|
O3
|
a:OEX404
|
2.0
|
26.8
|
1.0
|
|
OD1
|
a:ASP342
|
2.0
|
24.6
|
1.0
|
|
O1
|
a:OEX404
|
2.1
|
22.8
|
1.0
|
|
OE1
|
c:GLU354
|
2.2
|
25.9
|
1.0
|
|
MN1
|
a:OEX404
|
2.8
|
25.9
|
1.0
|
|
C
|
a:ALA344
|
2.8
|
33.8
|
1.0
|
|
MN3
|
a:OEX404
|
2.9
|
25.1
|
1.0
|
|
CG
|
a:ASP342
|
3.0
|
21.9
|
1.0
|
|
CD
|
c:GLU354
|
3.0
|
26.9
|
1.0
|
|
O
|
a:ALA344
|
3.2
|
30.3
|
1.0
|
|
OD2
|
a:ASP342
|
3.2
|
25.1
|
1.0
|
|
OE2
|
c:GLU354
|
3.2
|
25.1
|
1.0
|
|
CA1
|
a:OEX404
|
3.3
|
27.7
|
1.0
|
|
O5
|
a:OEX404
|
3.8
|
28.2
|
1.0
|
|
O
|
c:HOH1084
|
3.8
|
29.0
|
1.0
|
|
NE2
|
a:HIS337
|
3.9
|
28.7
|
1.0
|
|
CA
|
a:ALA344
|
4.2
|
32.8
|
1.0
|
|
OE2
|
a:GLU189
|
4.2
|
24.2
|
1.0
|
|
O
|
a:HOH609
|
4.3
|
33.4
|
1.0
|
|
CD2
|
a:HIS337
|
4.3
|
24.6
|
1.0
|
|
N
|
a:ALA344
|
4.3
|
31.7
|
1.0
|
|
CB
|
a:ASP342
|
4.4
|
23.4
|
1.0
|
|
CG
|
c:GLU354
|
4.4
|
26.3
|
1.0
|
|
OE1
|
a:GLU333
|
4.5
|
28.5
|
1.0
|
|
NE2
|
a:HIS332
|
4.6
|
26.0
|
1.0
|
|
O4
|
a:OEX404
|
4.6
|
27.2
|
1.0
|
|
NH2
|
c:ARG357
|
4.7
|
33.2
|
1.0
|
|
CB
|
c:GLU354
|
4.8
|
26.3
|
1.0
|
|
CA
|
a:ASP342
|
4.8
|
23.0
|
1.0
|
|
O
|
a:HOH515
|
4.8
|
28.9
|
1.0
|
|
CD
|
a:GLU189
|
4.9
|
27.7
|
1.0
|
|
OE1
|
a:GLU189
|
4.9
|
30.1
|
1.0
|
|
OD2
|
a:ASP170
|
4.9
|
27.4
|
1.0
|
|
NH1
|
c:ARG357
|
5.0
|
33.2
|
1.0
|
|
C
|
a:ASP342
|
5.0
|
25.6
|
1.0
|
|
Manganese binding site 7 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 7 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn404
b:25.1
occ:1.00
|
MN3
|
a:OEX404
|
0.0
|
25.1
|
1.0
|
|
O3
|
a:OEX404
|
1.9
|
26.8
|
1.0
|
|
O2
|
a:OEX404
|
1.9
|
27.6
|
1.0
|
|
OE1
|
a:GLU333
|
1.9
|
28.5
|
1.0
|
|
O4
|
a:OEX404
|
2.1
|
27.2
|
1.0
|
|
OE2
|
c:GLU354
|
2.2
|
25.1
|
1.0
|
|
O5
|
a:OEX404
|
2.3
|
28.2
|
1.0
|
|
MN4
|
a:OEX404
|
2.9
|
29.5
|
1.0
|
|
MN2
|
a:OEX404
|
2.9
|
26.4
|
1.0
|
|
CD
|
a:GLU333
|
3.0
|
27.9
|
1.0
|
|
CD
|
c:GLU354
|
3.1
|
26.9
|
1.0
|
|
MN1
|
a:OEX404
|
3.3
|
25.9
|
1.0
|
|
OE2
|
a:GLU333
|
3.3
|
25.1
|
1.0
|
|
CA1
|
a:OEX404
|
3.4
|
27.7
|
1.0
|
|
OE1
|
c:GLU354
|
3.5
|
25.9
|
1.0
|
|
O1
|
a:OEX404
|
3.6
|
22.8
|
1.0
|
|
NH2
|
c:ARG357
|
4.0
|
33.2
|
1.0
|
|
O
|
c:HOH1086
|
4.0
|
28.7
|
1.0
|
|
OD1
|
a:ASP170
|
4.1
|
27.7
|
1.0
|
|
NE2
|
a:HIS337
|
4.2
|
28.7
|
1.0
|
|
NE2
|
a:HIS332
|
4.2
|
26.0
|
1.0
|
|
O
|
a:HOH542
|
4.3
|
25.6
|
1.0
|
|
OD2
|
a:ASP170
|
4.3
|
27.4
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
25.4
|
1.0
|
|
OXT
|
a:ALA344
|
4.4
|
33.3
|
1.0
|
|
CD2
|
a:HIS332
|
4.5
|
22.9
|
1.0
|
|
CG
|
c:GLU354
|
4.5
|
26.3
|
1.0
|
|
O
|
a:HOH574
|
4.5
|
26.2
|
1.0
|
|
CG
|
a:ASP170
|
4.7
|
27.3
|
1.0
|
|
OD1
|
a:ASP342
|
4.7
|
24.6
|
1.0
|
|
O
|
a:ALA344
|
4.7
|
30.3
|
1.0
|
|
CB
|
a:GLU333
|
4.7
|
24.9
|
1.0
|
|
O
|
a:HOH543
|
4.7
|
30.5
|
1.0
|
|
OE2
|
a:GLU189
|
4.8
|
24.2
|
1.0
|
|
CE1
|
a:HIS337
|
4.8
|
28.6
|
1.0
|
|
O
|
a:HOH585
|
4.8
|
28.8
|
1.0
|
|
OD2
|
a:ASP342
|
4.9
|
25.1
|
1.0
|
|
Manganese binding site 8 out
of 8 in 3wu2
Go back to
Manganese Binding Sites List in 3wu2
Manganese binding site 8 out
of 8 in the Crystal Structure Analysis of Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Crystal Structure Analysis of Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mn404
b:29.5
occ:1.00
|
MN4
|
a:OEX404
|
0.0
|
29.5
|
1.0
|
|
O4
|
a:OEX404
|
2.1
|
27.2
|
1.0
|
|
OD1
|
a:ASP170
|
2.1
|
27.7
|
1.0
|
|
OE2
|
a:GLU333
|
2.1
|
25.1
|
1.0
|
|
O
|
a:HOH574
|
2.2
|
26.2
|
1.0
|
|
O
|
a:HOH543
|
2.2
|
30.5
|
1.0
|
|
O5
|
a:OEX404
|
2.3
|
28.2
|
1.0
|
|
MN3
|
a:OEX404
|
2.9
|
25.1
|
1.0
|
|
CD
|
a:GLU333
|
3.0
|
27.9
|
1.0
|
|
OE1
|
a:GLU333
|
3.2
|
28.5
|
1.0
|
|
CG
|
a:ASP170
|
3.2
|
27.3
|
1.0
|
|
O
|
a:HOH585
|
3.7
|
28.8
|
1.0
|
|
OD2
|
a:ASP170
|
3.7
|
27.4
|
1.0
|
|
CA1
|
a:OEX404
|
3.8
|
27.7
|
1.0
|
|
O2
|
a:OEX404
|
3.9
|
27.6
|
1.0
|
|
O
|
a:HOH542
|
4.0
|
25.6
|
1.0
|
|
O
|
a:HOH513
|
4.0
|
27.5
|
1.0
|
|
OD1
|
a:ASP61
|
4.2
|
28.5
|
1.0
|
|
O
|
a:HOH605
|
4.3
|
24.7
|
1.0
|
|
CG
|
a:GLU333
|
4.4
|
25.4
|
1.0
|
|
O3
|
a:OEX404
|
4.4
|
26.8
|
1.0
|
|
O
|
a:SER169
|
4.4
|
24.3
|
1.0
|
|
CB
|
a:ASP170
|
4.5
|
25.2
|
1.0
|
|
CA
|
a:ASP170
|
4.6
|
22.1
|
1.0
|
|
O
|
a:HOH608
|
4.8
|
26.4
|
1.0
|
|
OE2
|
c:GLU354
|
4.8
|
25.1
|
1.0
|
|
NH2
|
c:ARG357
|
4.8
|
33.2
|
1.0
|
|
MN1
|
a:OEX404
|
4.9
|
25.9
|
1.0
|
|
C
|
a:SER169
|
5.0
|
22.4
|
1.0
|
|
Reference:
Y.Umena,
K.Kawakami,
J.-R.Shen,
N.Kamiya.
Crystal Structure of Oxygen-Evolving Photosystem II at A Resolution of 1.9 A Nature V. 473 55 2011.
ISSN: ISSN 0028-0836
PubMed: 21499260
DOI: 10.1038/NATURE09913
Page generated: Sat Oct 5 18:28:12 2024
|
