Manganese in PDB 3w99: Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region

The structure of Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region, PDB code: 3w99 was solved by W.Iwasaki, Y.Miya, N.Horikoshi, A.Osakabe, H.Tachiwana, T.Shibata, W.Kagawa, H.Kurumizaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.54 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	105.704, 109.292, 175.719, 90.00, 90.00, 90.00
R / Rfree (%)	24.4 / 31.2

The binding sites of Manganese atom in the Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region (pdb code 3w99). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region, PDB code: 3w99:

Manganese binding site 1 out of 1 in the Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human Nucleosome Core Particle Lacking H4 N- Terminal Region within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn1001 b:75.1 occ:1.00 OD2 E:ASP77 2.2 92.9 1.0 CG E:ASP77 3.0 94.0 1.0 OD1 E:ASP77 3.2 92.6 1.0 NE2 E:GLN76 4.1 94.5 1.0 CB E:ASP77 4.5 78.3 1.0 O E:GLU73 4.5 74.4 1.0 O F:LEU22 4.5 78.0 1.0 CG E:GLU73 4.7 59.9 1.0 CA E:ASP77 4.9 85.0 1.0 CD E:GLN76 4.9 94.4 1.0 N E:ASP77 4.9 83.3 1.0

W.Iwasaki, Y.Miya, N.Horikoshi, A.Osakabe, H.Taguchi, H.Tachiwana, T.Shibata, W.Kagawa, H.Kurumizaka. Contribution of Histone N-Terminal Tails to the Structure and Stability of Nucleosomes Febs Open Bio V. 3 363 2013.
ISSN: ESSN 2211-5463
PubMed: 24251097
DOI: 10.1016/J.FOB.2013.08.007