Manganese in PDB 3v9d: Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex

The structure of Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex, PDB code: 3v9d was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.34 / 2.50
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	29.340, 29.340, 87.687, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 24.4

The binding sites of Manganese atom in the Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex (pdb code 3v9d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex, PDB code: 3v9d:

Manganese binding site 1 out of 1 in the Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Tetra-Decanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn101 b:70.3 occ:1.00 O B:HOH208 2.4 42.0 1.0 N7 B:DG13 2.8 28.0 1.0 C8 B:DG13 3.5 27.6 1.0 C5 B:DG13 4.0 26.3 1.0 O6 B:DG13 4.2 30.8 1.0 OP2 B:DG13 4.5 42.0 1.0 C6 B:DG13 4.5 27.8 1.0 N7 B:DG12 4.6 30.5 1.0 C5 B:DG12 4.7 26.4 1.0 C6 B:DG12 4.8 26.3 1.0 N9 B:DG13 4.8 29.3 1.0 O6 B:DG12 4.8 30.8 1.0 N7 B:DG14 5.0 30.8 1.0

P.K.Mandal, S.Venkadesh, N.Gautham. Structure of the Tetradecanucleotide D(Ccccggtaccgggg)2 As An A-Dna Duplex Acta Crystallogr.,Sect.F V. 68 393 2012.
ISSN: ESSN 1744-3091
PubMed: 22505405
DOI: 10.1107/S174430911200869X