Chemical elements
  Manganese
    Isotopes
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    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
      3twz
      3tx0
      3u6w
      3uag
      3uct
      3ufx
      3un2
      3un3
      3un5
      3uny
      3uo0
      3upq
      3uq1
      3ut9
      3uta
      3utb
      3v1r
      3v9d
      3vni
      3vnj
      3vnk
      3vnl
      3vnm
      3vrs
      3zvu
      4a6v
      4a6w
      4a8o
      4avg
      4avl
      4avq
      4awf
      4awg
      4awh
      4awm
      4b02
      4cev
      4dec
      4dmw
      4dps
      4dqr
      4dr0
      4ds8
      4dz4
      4e2q
      4e2s
      4e3v
      4e4e
      4e5e
      4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structures Of the Reverse Transcriptase-Associated Ribonuclease H Domain of Xmrv With Inhibitor Beta-Thujaplicinol (pdb 3v1r)






The binding sites of Manganese atom in the structure of Crystal Structures Of the Reverse Transcriptase-Associated Ribonuclease H Domain of Xmrv With Inhibitor Beta-Thujaplicinol (pdb code 3v1r). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3v1r structure was solved by D.ZHOU, A.WLODAWER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)27.2-2.8
Space groupC2221
a (A)53.677
b (A)84.750
c (A)70.817
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.5
Rfree (%)27.7


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 3v1r


Manganese binding site 1 out of 2 in 3v1r
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 3v1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3v1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp524, A: Gly525, A: Glu562, A: Asp583, A: Ser584, A: Mn674, A: Jth675,

conact list:


AtomAtomDistance (A)
MnCB A:Asp5244.47
MnOD2 A:Asp5244.06
MnOD1 A:Asp5242.17
MnCG A:Asp5243.38
MnCA A:Asp5244.59
MnO A:Gly5254.28
MnN A:Gly5254.55
MnOE1 A:Glu5623.24
MnOE2 A:Glu5622.16
MnCD A:Glu5623.04
MnCG A:Glu5624.45
MnO A:Asp5834.85
MnN A:Asp5834.84
MnCB A:Asp5834.18
MnOD2 A:Asp5832.71
MnC A:Asp5834.51
MnOD1 A:Asp5832.18
MnCG A:Asp5832.74
MnCA A:Asp5834.72
MnN A:Ser5844.53
MnCB A:Ser5844.73
MnCA A:Ser5844.98
MnMN A:Mn6743.94
MnC6 A:Jth6754.47
MnO2 A:Jth6754.84
MnC7 A:Jth6753.12
MnC1 A:Jth6753.15
MnO1 A:Jth6752.39
MnO7 A:Jth6752.25
MnC2 A:Jth6754.56

interactive model:


Manganese binding site 2 out of 2 in 3v1r


Manganese binding site 2 out of 2 in 3v1r
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 3v1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 3v1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp524, A: Gly525, A: Asp583, A: His638, A: Asp653, A: Arg657, A: Mn673, A: Jth675,

conact list:


AtomAtomDistance (A)
MnCB A:Asp5244.35
MnOD2 A:Asp5242.16
MnOD1 A:Asp5243.04
MnCG A:Asp5242.93
MnO A:Gly5253.85
MnOD2 A:Asp5834.33
MnNE2 A:His6383.64
MnND1 A:His6384.39
MnCD2 A:His6384.99
MnCE1 A:His6383.18
MnO A:Asp6534.97
MnCB A:Asp6533.53
MnOD2 A:Asp6534.30
MnC A:Asp6534.88
MnOD1 A:Asp6532.14
MnCG A:Asp6533.16
MnCA A:Asp6534.00
MnCZ A:Arg6573.59
MnNE A:Arg6574.70
MnNH2 A:Arg6573.90
MnNH1 A:Arg6572.58
MnMN A:Mn6733.94
MnO2 A:Jth6752.31
MnC7 A:Jth6754.38
MnC1 A:Jth6753.01
MnO1 A:Jth6752.15
MnC3 A:Jth6754.42
MnO7 A:Jth6754.76
MnC2 A:Jth6753.16

interactive model:




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