Atomistry » Manganese » PDB 3sx5-3u95 » 3u95
Atomistry »
  Manganese »
    PDB 3sx5-3u95 »
      3u95 »

Manganese in PDB 3u95: Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana

Protein crystallography data

The structure of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana, PDB code: 3u95 was solved by N.C.Ha, S.Y.Jun, B.Y.Yun, B.Y.Yoon, S.Piao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.90 / 2.00
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 154.532, 154.532, 139.065, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 22.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana (pdb code 3u95). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana, PDB code: 3u95:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 1 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:55.1
occ:1.00
NE2 A:HIS210 2.3 30.8 1.0
O A:HOH1014 2.7 31.8 1.0
SG A:CYS181 2.8 46.9 1.0
CE1 A:HIS210 3.2 25.3 1.0
CD2 A:HIS210 3.4 28.6 1.0
CB A:CYS181 3.4 37.9 1.0
O A:HOH1849 3.4 36.6 1.0
OD2 A:ASP267 3.8 37.5 1.0
O A:HOH1179 3.8 31.0 1.0
CA A:CYS181 4.2 33.7 1.0
ND1 A:HIS210 4.4 26.9 1.0
CG A:HIS210 4.5 23.2 1.0
ND2 A:ASN209 4.6 28.6 1.0
N A:HIS182 4.6 45.7 1.0
CG A:ASP267 4.8 30.1 1.0
C A:CYS181 4.9 37.1 1.0
ND2 A:ASN160 4.9 22.3 1.0
OD1 A:ASN160 5.0 22.3 1.0

Manganese binding site 2 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 2 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn602

b:48.2
occ:1.00
NE2 B:HIS210 2.1 26.9 1.0
SG B:CYS181 2.6 40.3 1.0
O B:HOH1396 2.8 43.3 1.0
CD2 B:HIS210 3.0 24.3 1.0
CE1 B:HIS210 3.1 27.4 1.0
CB B:CYS181 3.4 33.6 1.0
OD2 B:ASP267 3.8 32.9 1.0
O B:HOH622 4.0 34.0 1.0
CA B:CYS181 4.2 35.1 1.0
CG B:HIS210 4.2 25.9 1.0
ND1 B:HIS210 4.2 28.8 1.0
N B:HIS182 4.4 42.4 1.0
OD1 B:ASN209 4.5 24.0 1.0
O B:HOH2288 4.6 43.5 1.0
O B:HOH2480 4.7 49.7 1.0
CG B:ASP267 4.8 25.1 1.0
C B:CYS181 4.8 39.6 1.0
O B:HOH2284 4.8 36.4 1.0
OD1 B:ASN160 4.9 23.4 1.0
ND2 B:ASN160 4.9 25.4 1.0
ND2 B:ASN209 5.0 21.1 1.0

Manganese binding site 3 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 3 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn500

b:51.1
occ:1.00
NE2 C:HIS210 2.1 32.9 1.0
O C:HOH1574 2.4 35.4 1.0
SG C:CYS181 2.7 45.9 1.0
O C:HOH1567 2.7 45.6 1.0
O C:HOH2182 2.8 46.2 1.0
CE1 C:HIS210 3.1 25.8 1.0
CD2 C:HIS210 3.2 27.4 1.0
O C:HOH1592 3.2 42.2 1.0
CB C:CYS181 3.2 35.1 1.0
OD2 C:ASP267 3.7 37.7 1.0
O C:HOH1674 3.9 35.8 1.0
CA C:CYS181 4.1 38.0 1.0
ND1 C:HIS210 4.2 28.7 1.0
CG C:HIS210 4.3 27.9 1.0
N C:HIS182 4.4 41.0 1.0
OD1 C:ASN209 4.6 27.0 1.0
C C:CYS181 4.8 39.4 1.0
CG C:ASP267 4.9 27.2 1.0
OD1 C:ASN160 5.0 23.6 1.0

Manganese binding site 4 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 4 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn600

b:58.2
occ:1.00
NE2 D:HIS210 2.3 28.8 1.0
O D:HOH1377 2.5 34.2 1.0
SG D:CYS181 2.9 46.5 1.0
CE1 D:HIS210 3.2 23.7 1.0
CD2 D:HIS210 3.3 24.7 1.0
CB D:CYS181 3.3 31.3 1.0
O D:HOH726 3.8 33.6 1.0
OD2 D:ASP267 3.9 37.2 1.0
CA D:CYS181 4.2 32.8 1.0
ND1 D:HIS210 4.3 28.7 1.0
CG D:HIS210 4.4 23.7 1.0
ND2 D:ASN209 4.6 23.0 1.0
N D:HIS182 4.7 38.3 1.0
OD1 D:ASN160 4.8 21.8 1.0
ND2 D:ASN160 4.8 22.6 1.0
C D:CYS181 4.9 36.2 1.0
CG D:ASP267 5.0 30.2 1.0

Manganese binding site 5 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 5 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn600

b:51.2
occ:1.00
NE2 E:HIS210 2.3 27.4 1.0
O E:HOH1092 2.4 29.9 1.0
SG E:CYS181 2.7 43.9 1.0
O E:HOH1575 3.0 36.8 1.0
CE1 E:HIS210 3.1 26.0 1.0
CD2 E:HIS210 3.3 26.8 1.0
CB E:CYS181 3.5 33.3 1.0
O E:HOH575 3.7 32.8 1.0
OD2 E:ASP267 3.9 37.4 1.0
ND1 E:HIS210 4.3 25.4 1.0
CA E:CYS181 4.3 36.6 1.0
CG E:HIS210 4.4 24.9 1.0
ND2 E:ASN209 4.5 25.4 1.0
ND2 E:ASN160 4.7 21.1 1.0
OD1 E:ASN160 4.8 21.7 1.0
N E:HIS182 4.8 39.6 1.0
CG E:ASP267 5.0 27.9 1.0

Manganese binding site 6 out of 6 in 3u95

Go back to Manganese Binding Sites List in 3u95
Manganese binding site 6 out of 6 in the Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of A Putative Alpha-Glucosidase From Thermotoga Neapolitana within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn600

b:52.6
occ:1.00
NE2 F:HIS210 2.3 30.9 1.0
SG F:CYS181 2.6 44.5 1.0
CB F:CYS181 3.1 40.5 1.0
CD2 F:HIS210 3.2 28.9 1.0
CE1 F:HIS210 3.3 27.3 1.0
OD2 F:ASP267 3.5 39.4 1.0
O F:HOH900 4.0 35.5 1.0
CA F:CYS181 4.0 36.2 1.0
O F:HOH1763 4.2 45.1 1.0
O F:HOH1487 4.3 47.6 1.0
CG F:HIS210 4.4 25.8 1.0
N F:HIS182 4.4 43.9 1.0
ND1 F:HIS210 4.4 27.4 1.0
C F:CYS181 4.6 38.8 1.0
OD1 F:ASN209 4.7 29.3 1.0
CG F:ASP267 4.7 28.1 1.0

Reference:

B.Y.Yun, S.Y.Jun, N.A.Kim, B.Y.Yoon, S.Piao, S.H.Park, S.H.Jeong, H.Lee, N.C.Ha. Crystal Structure and Thermostability of A Putative Alpha-Glucosidase From Thermotoga Neapolitana Biochem.Biophys.Res.Commun. V. 416 92 2011.
ISSN: ISSN 0006-291X
PubMed: 22093829
DOI: 10.1016/J.BBRC.2011.11.002
Page generated: Tue Dec 15 04:16:01 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy