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Manganese in PDB 3tqk: Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4

Enzymatic activity of Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4

All present enzymatic activity of Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4:
2.5.1.54;

Protein crystallography data

The structure of Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4, PDB code: 3tqk was solved by M.C.Franklin, J.Cheung, M.Rudolph, M.Cassidy, E.Gary, F.Burshteyn, J.Love, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.30
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.690, 84.690, 107.387, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 22.7

Other elements in 3tqk:

The structure of Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4 (pdb code 3tqk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4, PDB code: 3tqk:

Manganese binding site 1 out of 1 in 3tqk

Go back to Manganese Binding Sites List in 3tqk
Manganese binding site 1 out of 1 in the Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase From Francisella Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1001

b:38.0
occ:1.00
 OE2 A:GLU307 2.0 35.5 1.0
NE2 A:HIS274 2.2 36.2 1.0
OD2 A:ASP330 2.3 33.3 1.0
OXT A:ACT1002 2.5 48.8 1.0
SG A:CYS66 2.6 33.5 1.0
CD A:GLU307 3.0 35.8 1.0
CD2 A:HIS274 3.1 36.4 1.0
CE1 A:HIS274 3.2 36.4 1.0
CG A:ASP330 3.3 37.6 1.0
OE1 A:GLU307 3.4 37.1 1.0
C A:ACT1002 3.4 48.8 1.0
O A:ACT1002 3.4 49.0 1.0
CB A:ASP330 3.6 38.5 1.0
CB A:CYS66 3.7 33.5 1.0
NH2 A:ARG97 3.9 31.7 1.0
O A:HOH358 3.9 14.8 1.0
CA A:CYS66 4.2 32.2 1.0
CG A:HIS274 4.3 36.0 1.0
ND1 A:HIS274 4.3 36.4 1.0
O A:HOH512 4.4 8.3 1.0
CG A:GLU307 4.4 33.9 1.0
OD1 A:ASP330 4.4 39.2 1.0
O A:CYS66 4.4 29.9 1.0
C A:CYS66 4.6 31.2 1.0
CH3 A:ACT1002 4.8 48.7 1.0
CZ A:ARG97 4.8 29.4 1.0
NZ A:LYS279 4.9 51.8 1.0
CA A:ASP330 4.9 40.1 1.0
CD A:LYS102 5.0 43.0 1.0

Reference:

S.Chaudhury, M.D.Abdulhameed, N.Singh, G.J.Tawa, P.M.D'haeseleer, A.T.Zemla, A.Navid, C.E.Zhou, M.C.Franklin, J.Cheung, M.J.Rudolph, J.Love, J.F.Graf, D.A.Rozak, J.L.Dankmeyer, K.Amemiya, S.Daefler, A.Wallqvist. Rapid Countermeasure Discovery Against Francisella Tularensis Based on A Metabolic Network Reconstruction. Plos One V. 8 63369 2013.
ISSN: ESSN 1932-6203
PubMed: 23704901
DOI: 10.1371/JOURNAL.PONE.0063369
Page generated: Tue Dec 15 04:15:46 2020

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