Manganese in PDB 3tc3: Crystal Structure of Sacuvde

The structure of Crystal Structure of Sacuvde, PDB code: 3tc3 was solved by E.M.Meulenbroek, I.Jala, G.F.Moolenaar, N.Goosen, N.S.Pannu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.05 / 1.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.075, 53.585, 77.395, 102.10, 93.02, 111.77
R / Rfree (%)	17.7 / 21.4

The binding sites of Manganese atom in the Crystal Structure of Sacuvde (pdb code 3tc3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Sacuvde, PDB code: 3tc3:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Sacuvde


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Sacuvde within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn290 b:45.1 occ:1.00 OD2 A:ASP199 1.9 21.8 1.0 OE2 A:GLU174 2.2 31.5 1.0 OE1 A:GLU267 2.3 26.3 1.0 O A:HOH538 2.4 26.8 1.0 OD2 A:ASP230 2.8 23.4 1.0 CD A:GLU267 3.0 20.8 1.0 OE2 A:GLU267 3.1 22.6 1.0 CD A:GLU174 3.1 24.7 1.0 CG A:ASP199 3.2 18.5 1.0 CB A:ASP230 3.4 15.0 1.0 CG A:ASP230 3.4 17.6 1.0 OE1 A:GLU174 3.5 24.2 1.0 CE1 A:HIS202 3.7 21.6 1.0 CB A:ASP199 3.8 14.8 1.0 OD1 A:ASP199 4.1 18.4 1.0 NE2 A:HIS202 4.2 19.1 1.0 ND1 A:HIS202 4.3 16.7 1.0 CG A:GLU174 4.3 18.6 1.0 CG A:GLU267 4.4 15.2 1.0 OD1 A:ASP230 4.5 18.0 1.0 CA A:ASP230 4.8 12.5 1.0 CA A:ASP199 4.9 12.4 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Sacuvde


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Sacuvde within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn290 b:56.5 occ:1.00 OD2 B:ASP199 2.0 27.9 1.0 OE2 B:GLU174 2.2 34.5 1.0 OE1 B:GLU267 2.3 24.3 1.0 O B:HOH441 2.5 28.0 1.0 OD2 B:ASP230 2.8 25.3 1.0 CD B:GLU267 3.0 20.0 1.0 OE2 B:GLU267 3.1 23.5 1.0 CD B:GLU174 3.2 26.9 1.0 CG B:ASP199 3.2 20.4 1.0 CB B:ASP230 3.4 14.9 1.0 CG B:ASP230 3.5 17.4 1.0 OE1 B:GLU174 3.5 24.9 1.0 CE1 B:HIS202 3.8 23.6 1.0 CB B:ASP199 3.9 16.4 1.0 OD1 B:ASP199 4.2 19.8 1.0 CG B:GLU267 4.4 15.9 1.0 ND1 B:HIS202 4.4 18.2 1.0 NE2 B:HIS202 4.4 24.4 1.0 CG B:GLU174 4.4 20.1 1.0 OD1 B:ASP230 4.6 20.2 1.0 NE2 B:GLN139 4.8 21.7 1.0 CA B:ASP230 4.9 13.4 1.0 CA B:ASP199 4.9 14.4 1.0 CB B:GLU267 5.0 13.7 1.0

E.M.Meulenbroek, C.Peron Cane, I.Jala, S.Iwai, G.F.Moolenaar, N.Goosen, N.S.Pannu. Uv Damage Endonuclease Employs A Novel Dual-Dinucleotide Flipping Mechanism to Recognize Different Dna Lesions. Nucleic Acids Res. V. 41 1363 2013.
ISSN: ISSN 0305-1048
PubMed: 23221644
DOI: 10.1093/NAR/GKS1127