Manganese in PDB 3sxd: Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant

All present enzymatic activity of Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant:
2.4.1.37;

The structure of Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant, PDB code: 3sxd was solved by A.R.Johal, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.55
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.560, 149.830, 78.970, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 22.7

The binding sites of Manganese atom in the Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant (pdb code 3sxd). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant, PDB code: 3sxd:

Manganese binding site 1 out of 1 in the Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Bbbb+Udp+Gal with Mpd As the Cryoprotectant within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn355 b:25.2 occ:0.40 O1A A:UDP1 2.1 20.2 0.4 O3B A:UDP1 2.2 28.6 0.4 OD2 A:ASP211 2.4 22.9 1.0 OD1 A:ASP213 2.4 23.3 1.0 OD2 A:ASP213 3.0 31.9 1.0 CG A:ASP213 3.1 22.4 1.0 PB A:UDP1 3.2 29.5 0.4 CG A:ASP211 3.3 21.8 1.0 PA A:UDP1 3.4 24.0 0.4 CB A:ASP211 3.6 17.2 1.0 O3A A:UDP1 3.7 28.6 0.4 O3' A:UDP1 3.9 26.7 1.0 O1B A:UDP1 3.9 28.1 0.4 CE A:MET214 4.0 13.7 0.5 C5' A:UDP1 4.3 24.0 1.0 O5' A:UDP1 4.3 22.8 0.4 OD1 A:ASP211 4.4 21.6 1.0 O2A A:UDP1 4.4 27.5 0.4 O2B A:UDP1 4.6 28.1 0.4 C3' A:UDP1 4.6 19.4 0.4 CB A:ASP213 4.6 19.2 1.0 C4' A:UDP1 4.8 25.4 1.0 O A:HOH494 4.9 40.9 1.0 O A:HOH477 5.0 39.3 1.0 O A:ASP213 5.0 17.0 1.0 SD A:MET214 5.0 16.6 0.5 SD A:MET214 5.0 26.8 0.5

A.R.Johal, B.Schuman, J.A.Alfaro, S.Borisova, N.O.Seto, S.V.Evans. Sequence-Dependent Effects of Cryoprotectants on the Active Sites of the Human Abo(H) Blood Group A and B Glycosyltransferases. Acta Crystallogr.,Sect.D V. 68 268 2012.
ISSN: ISSN 0907-4449
PubMed: 22349229
DOI: 10.1107/S0907444912001801