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Manganese in PDB 3sx3: Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant

Enzymatic activity of Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant

All present enzymatic activity of Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant:
2.4.1.37;

Protein crystallography data

The structure of Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant, PDB code: 3sx3 was solved by A.R.Johal, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.45
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.390, 149.120, 79.460, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 22.7

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant (pdb code 3sx3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant, PDB code: 3sx3:

Manganese binding site 1 out of 1 in 3sx3

Go back to Manganese Binding Sites List in 3sx3
Manganese binding site 1 out of 1 in the Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Aabb+Udp+Gal with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn356

b:14.7
occ:1.00
O1A A:UDP1 2.1 16.1 1.0
O3B A:UDP1 2.1 17.6 1.0
O A:HOH50 2.1 19.2 1.0
OD2 A:ASP211 2.1 15.7 1.0
OD1 A:ASP213 2.3 16.2 1.0
OD2 A:ASP213 2.5 17.3 1.0
CG A:ASP213 2.8 14.4 1.0
CG A:ASP211 3.2 15.1 1.0
PB A:UDP1 3.3 17.7 1.0
PA A:UDP1 3.4 16.5 1.0
O3A A:UDP1 3.5 16.4 1.0
CB A:ASP211 3.6 9.8 1.0
O3' A:UDP1 3.8 14.7 1.0
O1B A:UDP1 3.9 21.1 1.0
O A:HOH548 3.9 38.6 1.0
O A:HOH483 4.1 28.9 1.0
OD1 A:ASP211 4.3 13.4 1.0
C5' A:UDP1 4.3 14.1 1.0
CB A:ASP213 4.3 15.9 1.0
O A:HOH489 4.3 33.4 1.0
NZ A:LYS346 4.3 23.3 1.0
O5' A:UDP1 4.3 15.7 1.0
O2A A:UDP1 4.5 18.1 1.0
O2B A:UDP1 4.5 17.2 1.0
C3' A:UDP1 4.6 13.5 1.0
O A:HOH378 4.8 25.1 1.0
C4' A:UDP1 4.8 14.5 1.0
CE A:LYS346 4.9 21.2 1.0
O A:ASP213 4.9 12.9 1.0
N A:ASP213 5.0 12.0 1.0

Reference:

A.R.Johal, B.Schuman, J.A.Alfaro, S.Borisova, N.O.Seto, S.V.Evans. Sequence-Dependent Effects of Cryoprotectants on the Active Sites of the Human Abo(H) Blood Group A and B Glycosyltransferases. Acta Crystallogr.,Sect.D V. 68 268 2012.
ISSN: ISSN 0907-4449
PubMed: 22349229
DOI: 10.1107/S0907444912001801
Page generated: Sat Oct 5 17:55:54 2024

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