Atomistry » Manganese » PDB 3rla-3sx3 » 3s5a
Atomistry »
  Manganese »
    PDB 3rla-3sx3 »
      3s5a »

Manganese in PDB 3s5a: ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors

Protein crystallography data

The structure of ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors, PDB code: 3s5a was solved by C.Yi, B.Chen, B.Qi, B.Ramirez, W.Zhang, G.Jia, L.Zhang, C.Q.Li, A.R.Dinner, C.-G.Yang, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.968, 60.610, 65.588, 90.00, 90.52, 90.00
R / Rfree (%) 19.7 / 23.8

Manganese Binding Sites:

The binding sites of Manganese atom in the ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors (pdb code 3s5a). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors, PDB code: 3s5a:

Manganese binding site 1 out of 1 in 3s5a

Go back to Manganese Binding Sites List in 3s5a
Manganese binding site 1 out of 1 in the ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of ABH2 Cross-Linked to Undamaged Dsdna-2 with Cofactors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1

b:22.9
occ:1.00
NE2 A:HIS171 2.1 16.3 1.0
OD1 A:ASP173 2.2 25.3 1.0
O5 A:AKG259 2.2 28.0 1.0
O2 A:AKG259 2.2 26.3 1.0
NE2 A:HIS236 2.2 22.7 1.0
O A:HOH265 2.3 26.6 1.0
C2 A:AKG259 2.9 26.2 1.0
C1 A:AKG259 2.9 26.6 1.0
CE1 A:HIS171 3.1 17.2 1.0
CG A:ASP173 3.1 29.8 1.0
CD2 A:HIS171 3.1 17.9 1.0
CE1 A:HIS236 3.2 22.1 1.0
CD2 A:HIS236 3.2 21.2 1.0
OD2 A:ASP173 3.3 35.2 1.0
O1 A:AKG259 4.1 27.8 1.0
ND1 A:HIS171 4.2 18.7 1.0
CG A:HIS171 4.2 19.1 1.0
ND1 A:HIS236 4.3 19.2 1.0
CG A:HIS236 4.3 19.5 1.0
C3 A:AKG259 4.4 26.1 1.0
CB A:ASP173 4.5 28.3 1.0
NH2 A:ARG254 4.5 34.5 1.0
N A:ASP173 4.6 26.8 1.0
CA A:ASP173 4.8 28.4 1.0
C4 A:AKG259 4.8 26.1 1.0

Reference:

C.Yi, B.Chen, B.Qi, W.Zhang, G.Jia, L.Zhang, C.J.Li, A.R.Dinner, C.G.Yang, C.He. Duplex Interrogation By A Direct Dna Repair Protein in Search of Base Damage Nat.Struct.Mol.Biol. V. 19 671 2012.
ISSN: ISSN 1545-9993
PubMed: 22659876
DOI: 10.1038/NSMB.2320
Page generated: Sat Oct 5 17:52:57 2024

Last articles

As in 6H2P
As in 6GFZ
As in 6GFY
As in 6FMK
As in 6FMJ
As in 6GBL
As in 6FMI
As in 6EU7
As in 6EXU
As in 6EZV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy