Manganese in PDB 3rzk: Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage

The structure of Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage, PDB code: 3rzk was solved by C.Yi, B.Chen, B.Qi, W.Zhang, G.Jia, L.Zhang, C.Li, A.Dinner, C.Yang, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.78
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	78.591, 78.591, 228.881, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 25.9

The binding sites of Manganese atom in the Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage (pdb code 3rzk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage, PDB code: 3rzk:

Manganese binding site 1 out of 1 in the Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Duplex Interrogation By A Direct Dna Repair Protein in the Search of Damage within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1 b:55.2 occ:1.00 OD1 A:ASP173 2.1 68.3 1.0 NE2 A:HIS171 2.1 58.4 1.0 O5 A:AKG262 2.2 63.6 1.0 O2 A:AKG262 2.2 64.3 1.0 NE2 A:HIS236 2.4 52.7 1.0 CE1 A:HIS171 2.8 58.1 1.0 C1 A:AKG262 2.9 65.2 1.0 C2 A:AKG262 2.9 64.3 1.0 CG A:ASP173 2.9 69.4 1.0 OD2 A:ASP173 3.0 69.8 1.0 CD2 A:HIS236 3.2 53.1 1.0 CD2 A:HIS171 3.3 59.1 1.0 CE1 A:HIS236 3.5 53.8 1.0 C2 B:EDA265 3.9 44.1 1.0 ND1 A:HIS171 4.0 58.5 1.0 O1 A:AKG262 4.0 66.5 1.0 N1 B:EDA265 4.1 44.4 1.0 NH2 A:ARG254 4.3 54.7 1.0 CG A:HIS171 4.3 59.3 1.0 C3 A:AKG262 4.3 64.5 1.0 C10 B:EDA265 4.3 44.3 1.0 CB A:ASP173 4.4 69.9 1.0 CG A:HIS236 4.4 53.3 1.0 N3 B:EDA265 4.4 43.3 1.0 ND1 A:HIS236 4.5 53.8 1.0 C6 B:EDA265 4.8 44.0 1.0 CD1 A:ILE168 4.8 47.3 1.0 CA A:ASP173 4.9 70.6 1.0 N A:ASP173 4.9 69.0 1.0 C4 A:AKG262 4.9 65.2 1.0

C.Yi, B.Chen, B.Qi, W.Zhang, G.Jia, L.Zhang, C.J.Li, A.R.Dinner, C.G.Yang, C.He. Duplex Interrogation By A Direct Dna Repair Protein in Search of Base Damage Nat.Struct.Mol.Biol. V. 19 671 2012.
ISSN: ISSN 1545-9993
PubMed: 22659876
DOI: 10.1038/NSMB.2320