Manganese in PDB 3r3l: Structure of Np Protein From Lassa Av Strain

The structure of Structure of Np Protein From Lassa Av Strain, PDB code: 3r3l was solved by M.Perbandt, L.Brunotte, S.Gunther, C.Betzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.45
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	176.320, 176.320, 56.580, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 21.9

The structure of Structure of Np Protein From Lassa Av Strain also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Manganese atom in the Structure of Np Protein From Lassa Av Strain (pdb code 3r3l). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 5 binding sites of Manganese where determined in the Structure of Np Protein From Lassa Av Strain, PDB code: 3r3l:
Jump to Manganese binding site number: 1; 2; 3; 4; 5;

Manganese binding site 1 out of 5 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn583 b:30.0 occ:1.00 OD2 A:ASP204 1.7 20.0 1.0 OD2 B:ASP204 2.3 20.0 1.0 NE2 B:HIS226 2.3 20.0 1.0 CG A:ASP204 2.6 20.0 1.0 CD2 B:HIS226 2.8 20.0 1.0 OD1 A:ASP204 3.0 20.0 1.0 NE2 A:HIS226 3.0 20.0 1.0 CE1 A:HIS226 3.1 20.0 1.0 OG B:SER225 3.1 20.0 1.0 CG B:ASP204 3.5 20.0 1.0 CE1 B:HIS226 3.6 20.0 1.0 CB B:SER225 3.9 20.0 1.0 CB A:ASP204 3.9 20.0 1.0 CB B:ASP204 4.1 20.0 1.0 CG B:HIS226 4.1 20.0 1.0 CD2 B:LEU222 4.4 20.0 1.0 CD2 A:HIS226 4.4 20.0 1.0 ND1 B:HIS226 4.4 20.0 1.0 ND1 A:HIS226 4.4 20.0 1.0 OD1 B:ASP204 4.5 20.0 1.0 O A:GLN200 4.6 20.0 1.0

Manganese binding site 2 out of 5 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn584 b:30.0 occ:1.00 OD1 A:ASP389 1.9 20.0 1.0 OD2 A:ASP533 2.1 20.0 1.0 OE2 A:GLU391 2.4 20.0 1.0 CG A:ASP389 2.9 20.0 1.0 CG A:ASP533 3.2 20.0 1.0 OD2 A:ASP389 3.3 20.0 1.0 CD A:GLU391 3.5 20.0 1.0 CB A:ASP533 3.7 20.0 1.0 O A:ILE390 3.9 20.0 1.0 O A:CYS529 4.2 20.0 1.0 CA A:ALA530 4.2 20.0 1.0 CG A:GLU391 4.3 20.0 1.0 CB A:ASP389 4.3 20.0 1.0 OD1 A:ASP533 4.3 20.0 1.0 OE1 A:GLU391 4.5 20.0 1.0 C A:CYS529 4.5 20.0 1.0 C A:ILE390 4.5 20.0 1.0 N A:ALA530 4.6 20.0 1.0 CB A:HIS528 4.7 20.0 1.0 N A:ILE390 4.7 20.0 1.0 NH2 A:ARG492 4.9 20.0 1.0 CB A:ALA530 5.0 20.0 1.0

Manganese binding site 3 out of 5 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn583 b:30.0 occ:1.00 OD1 B:ASP389 2.1 20.0 1.0 OD2 B:ASP533 2.2 20.0 1.0 OE2 B:GLU391 2.6 20.0 1.0 CG B:ASP389 3.1 20.0 1.0 CG B:ASP533 3.3 20.0 1.0 OD2 B:ASP389 3.5 20.0 1.0 CD B:GLU391 3.5 20.0 1.0 O B:ILE390 3.6 20.0 1.0 OE1 B:GLU391 3.8 20.0 1.0 CB B:ASP533 4.0 20.0 1.0 OD1 B:ASP533 4.3 20.0 1.0 CB B:ASP389 4.4 20.0 1.0 C B:ILE390 4.5 20.0 1.0 N B:ILE390 4.7 20.0 1.0 CG B:GLU391 4.8 20.0 1.0 O B:CYS529 4.8 20.0 1.0 CE2 B:PHE537 5.0 20.0 1.0

Manganese binding site 4 out of 5 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn584 b:30.0 occ:1.00 NE2 B:GLN175 2.9 20.0 1.0 O B:ASN173 2.9 20.0 1.0 NH1 B:ARG68 3.0 20.0 1.0 CD B:GLN175 3.9 20.0 1.0 O B:ILE326 3.9 20.0 1.0 C B:ASN173 4.0 20.0 1.0 CZ B:ARG68 4.0 20.0 1.0 NH2 B:ARG68 4.2 20.0 1.0 O B:GLU170 4.2 20.0 1.0 CG B:GLN175 4.3 20.0 1.0 O B:THR324 4.4 20.0 1.0 CB B:ASN173 4.5 20.0 1.0 CG1 B:VAL327 4.5 20.0 1.0 N B:ASN173 4.5 20.0 1.0 CA B:ASN173 4.5 20.0 1.0 O B:LEU171 4.6 20.0 1.0 C B:ILE326 4.7 20.0 1.0 CA B:VAL327 4.7 20.0 1.0 CA B:LEU171 4.7 20.0 1.0 OE1 B:GLN175 4.7 20.0 1.0 C B:LEU171 4.7 20.0 1.0 O B:HOH624 4.8 30.0 1.0

Manganese binding site 5 out of 5 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn583 b:30.0 occ:1.00 OD2 C:ASP533 2.0 20.0 1.0 OD1 C:ASP389 2.1 20.0 1.0 OE2 C:GLU391 2.2 20.0 1.0 CG C:ASP389 3.0 20.0 1.0 CG C:ASP533 3.0 20.0 1.0 CD C:GLU391 3.4 20.0 1.0 OD2 C:ASP389 3.4 20.0 1.0 CB C:ASP533 3.5 20.0 1.0 O C:ILE390 3.6 20.0 1.0 OE1 C:GLU391 4.0 20.0 1.0 CA C:ALA530 4.1 20.0 1.0 OD1 C:ASP533 4.1 20.0 1.0 CB C:ASP389 4.3 20.0 1.0 O C:CYS529 4.3 20.0 1.0 C C:ILE390 4.4 20.0 1.0 N C:ALA530 4.5 20.0 1.0 CG C:GLU391 4.6 20.0 1.0 C C:CYS529 4.6 20.0 1.0 N C:ILE390 4.7 20.0 1.0 CB C:ALA530 4.7 20.0 1.0 CB C:HIS528 4.7 20.0 1.0 O C:ALA530 5.0 20.0 1.0 C C:ALA530 5.0 20.0 1.0

M.Perbandt, L.Brunotte, S.Gunther, C.Betzel. Structure of Np Protein of Lassa Av Strain To Be Published.