Manganese in PDB 3qvb: Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp

All present enzymatic activity of Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp:
2.4.1.186;

The structure of Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp, PDB code: 3qvb was solved by A.Chaikuad, D.S.Froese, W.W.Yue, E.Krysztofinska, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, U.Oppermann, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.03 / 2.26
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.400, 100.970, 48.940, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25.6

The binding sites of Manganese atom in the Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp (pdb code 3qvb). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp, PDB code: 3qvb:

Manganese binding site 1 out of 1 in the Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human Glycogenin-1 (GYG1) Complexed with Manganese and Udp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn263 b:25.8 occ:0.70 O2B A:UDP264 1.9 34.3 0.7 OD2 A:ASP102 2.0 30.1 1.0 OD1 A:ASP104 2.0 26.4 1.0 NE2 A:HIS212 2.1 21.5 1.0 O1A A:UDP264 2.3 40.2 0.7 CG A:ASP104 2.8 24.9 1.0 OD2 A:ASP104 2.8 31.3 1.0 CE1 A:HIS212 3.0 22.0 1.0 CG A:ASP102 3.0 24.6 1.0 CD2 A:HIS212 3.2 20.9 1.0 PB A:UDP264 3.3 37.7 0.7 CB A:ASP102 3.3 22.0 1.0 PA A:UDP264 3.5 41.0 0.7 O3A A:UDP264 3.7 38.4 0.7 O3' A:UDP264 3.7 31.8 0.7 O1B A:UDP264 3.9 33.7 0.7 OD1 A:ASP102 4.1 25.9 1.0 ND1 A:HIS212 4.1 19.2 1.0 C5' A:UDP264 4.2 37.1 0.7 CG A:HIS212 4.3 22.0 1.0 CB A:ASP104 4.3 21.6 1.0 O A:HOH388 4.3 31.1 1.0 O5' A:UDP264 4.4 39.8 0.7 O3B A:UDP264 4.4 35.1 0.7 O A:HOH362 4.5 42.4 1.0 O2A A:UDP264 4.5 41.5 0.7 C3' A:UDP264 4.5 32.8 0.7 NZ A:LYS218 4.6 26.9 1.0 C4' A:UDP264 4.8 36.1 0.7 CA A:ASP102 4.9 20.9 1.0 CA A:GLY135 5.0 18.9 1.0

A.Chaikuad, D.S.Froese, G.Berridge, F.Von Delft, U.Oppermann, W.W.Yue. Conformational Plasticity of Glycogenin and Its Maltosaccharide Substrate During Glycogen Biogenesis. Proc.Natl.Acad.Sci.Usa V. 108 21028 2011.
ISSN: ISSN 0027-8424
PubMed: 22160680
DOI: 10.1073/PNAS.1113921108