Chemical elements
  Manganese
    Isotopes
    Energy
    Production
    Application
    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
      3py5
      3py6
      3pyz
      3pzl
      3q23
      3q7c
      3qcz
      3qfk
      3qh8
      3r5u
      3reh
      3rei
      3rej
      3rek
      3rel
      3rla
      3rmj
      3rva
      3rvj
      3rvk
      3rvl
      3rvm
      3rvn
      3rvo
      3rvp
      3rvq
      3rvr
      3rvs
      3rzj
      3rzk
      3s0m
      3s0s
      3s21
      3s23
      3s57
      3s5a
      3s6v
      3shd
      3snm
      3sx3
      3sx5
      3sx7
      3sx8
      3sxa
      3sxb
      3sxc
      3sxd
      3sxe
      3sxg
      3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of 2.05 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex With Alpha-Ketoglutarate (pdb 3qfk)






The binding sites of Manganese atom in the structure of 2.05 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex With Alpha-Ketoglutarate (pdb code 3qfk). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3qfk structure was solved by G.MINASOV, Z.WAWRZAK, S.N.KRISHNA, A.HALAVATY, L.SHUVALOVA, I.DUBROVSKA, J.WINSOR, O.KIRYUKHINA, F.BAGNOLI, F.FALUGI, M.BOTTOMLEY, G.GRANDI, W.F.ANDERSON, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES(CSGID), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.2-2.0
Space groupC121
a (A)90.444
b (A)84.689
c (A)95.966
alpha (°)90.00
beta (°)116.91
gamma (°)90.00
Rfactor (%)17.3
Rfree (%)22.1


Manganese Binding Sites:

Manganese binding site 1 out of 1 in 3qfk


Manganese binding site 1 out of 1 in 3qfk
Click to enlarge
stereopicture of Manganese binding site 1 out of 1 in 3qfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3qfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp11, A: Asp56, A: Asn93, A: His94, A: His191, A: His231, A: Zn512, A: Hoh548, A: Hoh623, A: Hoh720,

conact list:


AtomAtomDistance (A)
MnOD1 A:Asp113.84
MnCG A:Asp114.99
MnCB A:Asp564.37
MnOD2 A:Asp562.40
MnOD1 A:Asp563.45
MnCG A:Asp563.15
MnN A:Asn934.22
MnCB A:Asn934.54
MnND2 A:Asn933.86
MnOD1 A:Asn932.15
MnCG A:Asn933.30
MnCA A:Asn934.93
MnNE2 A:His944.94
MnCD2 A:His944.30
MnNE2 A:His1912.41
MnND1 A:His1914.52
MnCD2 A:His1913.32
MnCE1 A:His1913.42
MnCG A:His1914.50
MnO A:His2314.10
MnNE2 A:His2314.48
MnN A:His2314.64
MnCB A:His2313.86
MnND1 A:His2312.47
MnCD2 A:His2314.62
MnC A:His2314.41
MnCE1 A:His2313.30
MnCG A:His2313.53
MnCA A:His2313.69
MnZN A:Zn5123.48
MnO A:Hoh5483.42
MnO A:Hoh6232.47
MnO A:Hoh7204.18

interactive model:




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