Atomistry » Manganese » PDB 3ot9-3q4q » 3q4q
Atomistry »
  Manganese »
    PDB 3ot9-3q4q »
      3q4q »

Manganese in PDB 3q4q: Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+

Protein crystallography data

The structure of Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+, PDB code: 3q4q was solved by K.Y.Hwang, E.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.56 / 1.75
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.707, 79.387, 93.885, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+ (pdb code 3q4q). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+, PDB code: 3q4q:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3q4q

Go back to Manganese Binding Sites List in 3q4q
Manganese binding site 1 out of 2 in the Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:22.6
occ:1.00
OE2 A:GLU54 2.0 17.0 1.0
O A:HOH247 2.0 17.9 1.0
OE1 A:GLU113 2.2 17.3 1.0
OE2 A:GLU113 2.3 19.1 1.0
ND1 A:HIS146 2.4 24.6 1.0
CD A:GLU113 2.6 19.1 1.0
O A:HOH249 2.9 30.4 1.0
CD A:GLU54 3.0 18.6 1.0
CE1 A:HIS146 3.3 26.0 1.0
OE1 A:GLU54 3.3 18.2 1.0
MN A:MN202 3.4 17.2 1.0
CG A:HIS146 3.5 21.8 1.0
CB A:HIS146 3.8 17.5 1.0
OG A:SER143 4.0 22.6 1.0
CG A:GLU113 4.1 17.5 1.0
CA A:SER143 4.1 17.6 1.0
CG A:GLU54 4.3 16.8 1.0
CB A:SER143 4.4 17.7 1.0
NE2 A:HIS146 4.4 20.7 1.0
CG2 A:ILE50 4.4 18.1 1.0
CE2 A:TYR35 4.5 16.8 1.0
CD2 A:HIS146 4.6 22.6 1.0
OH A:TYR35 4.6 16.6 1.0
O A:HOH245 4.6 18.6 1.0
N A:SER143 4.7 17.8 1.0
ND1 A:HIS57 4.7 14.0 1.0
CE1 A:HIS57 4.7 22.6 1.0
CB A:ALA31 4.9 15.5 1.0
O A:GLY142 4.9 19.3 1.0
CB A:GLU113 4.9 19.3 1.0
OD2 A:ASP116 5.0 27.6 1.0

Manganese binding site 2 out of 2 in 3q4q

Go back to Manganese Binding Sites List in 3q4q
Manganese binding site 2 out of 2 in the Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A Deletion Mutant(11-185) of Hypothetical Protein MJ0754 with MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn202

b:17.2
occ:1.00
O A:HOH247 1.9 17.9 1.0
OE1 A:GLU28 2.0 21.7 1.0
O A:HOH245 2.1 18.6 1.0
OE1 A:GLU54 2.2 18.2 1.0
ND1 A:HIS57 2.2 14.0 1.0
O A:HOH249 2.9 30.4 1.0
CE1 A:HIS57 3.1 22.6 1.0
CD A:GLU28 3.1 22.4 1.0
CD A:GLU54 3.2 18.6 1.0
CG A:HIS57 3.3 17.0 1.0
MN A:MN201 3.4 22.6 1.0
OE2 A:GLU54 3.5 17.0 1.0
OE2 A:GLU28 3.6 29.2 1.0
CB A:HIS57 3.7 16.7 1.0
OD2 A:ASP116 4.0 27.6 1.0
OG A:SER143 4.0 22.6 1.0
NE2 A:HIS57 4.3 21.3 1.0
CD2 A:HIS57 4.4 21.8 1.0
CG A:GLU28 4.4 19.4 1.0
CG A:ASP116 4.5 22.5 1.0
CG A:GLU54 4.6 16.8 1.0
O A:HOH226 4.6 24.3 1.0
CE1 A:HIS146 4.7 26.0 1.0
OD1 A:ASP116 4.7 27.5 1.0
CA A:GLU54 4.7 17.1 1.0
ND1 A:HIS146 4.7 24.6 1.0
O A:LEU139 4.8 21.9 1.0
CB A:GLU28 4.9 17.0 1.0
CB A:GLU54 4.9 16.1 1.0
CA A:GLU28 4.9 16.2 1.0
OE1 A:GLU113 5.0 17.3 1.0
CG A:LEU139 5.0 24.9 1.0

Reference:

E.H.Lee, H.S.Kim, H.Y.Kim, Y.H.Jeon, K.Y.Hwang. Structural Insights Into the Metal Binding Properties of Hypothetical Protein MJ0754 From Methanococcus Jannaschii. Proteins V. 79 2358 2011.
ISSN: ESSN 1097-0134
PubMed: 21604308
DOI: 10.1002/PROT.23066
Page generated: Tue Dec 15 04:14:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy