Manganese in PDB 3q2v: Crystal Structure of Mouse E-Cadherin Ectodomain

The structure of Crystal Structure of Mouse E-Cadherin Ectodomain, PDB code: 3q2v was solved by X.Jin, O.J.Harrison, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 3.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	119.140, 79.697, 176.001, 90.00, 98.56, 90.00
R / Rfree (%)	23 / 29.3

The structure of Crystal Structure of Mouse E-Cadherin Ectodomain also contains other interesting chemical elements:

Calcium

(Ca)

24 atoms

The binding sites of Manganese atom in the Crystal Structure of Mouse E-Cadherin Ectodomain (pdb code 3q2v). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Mouse E-Cadherin Ectodomain, PDB code: 3q2v:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Mouse E-Cadherin Ectodomain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mouse E-Cadherin Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn901 b:59.1 occ:1.00 OE2 A:GLU13 2.6 53.0 1.0 OE1 A:GLU13 2.8 55.8 1.0 CD A:GLU13 3.0 57.9 1.0 SG A:CYS9 3.3 44.7 1.0 CG A:GLU13 4.6 60.5 1.0 CD A:PRO10 4.6 45.9 1.0 CB A:CYS9 4.7 42.7 1.0 CD A:LYS19 4.8 61.0 1.0 CA A:CYS9 5.0 39.8 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Mouse E-Cadherin Ectodomain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Mouse E-Cadherin Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn901 b:54.8 occ:1.00 OE1 B:GLU13 2.3 49.7 1.0 OE2 B:GLU13 2.7 51.9 1.0 CD B:GLU13 2.8 53.8 1.0 SG B:CYS9 3.2 47.8 1.0 O B:HOH585 4.3 35.2 1.0 CG B:GLU13 4.4 59.0 1.0 CB B:CYS9 4.6 52.3 1.0 CD B:LYS19 4.6 60.3 1.0 CD2 B:LEU21 4.7 35.6 1.0 CA B:CYS9 4.8 50.8 1.0 CD B:PRO10 4.8 56.9 1.0 O B:ASN20 4.9 45.5 1.0

O.J.Harrison, X.Jin, S.Hong, F.Bahna, G.Ahlsen, J.Brasch, Y.Wu, J.Vendome, K.Felsovalyi, C.M.Hampton, R.B.Troyanovsky, A.Ben-Shaul, J.Frank, S.M.Troyanovsky, L.Shapiro, B.Honig. The Extracellular Architecture of Adherens Junctions Revealed By Crystal Structures of Type I Cadherins. Structure V. 19 244 2011.
ISSN: ISSN 0969-2126
PubMed: 21300292
DOI: 10.1016/J.STR.2010.11.016