Manganese in PDB 3p4h: Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily

The structure of Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily, PDB code: 3p4h was solved by P.Smith, P.A.Nair, U.Das, H.Zhu, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.40 / 1.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.769, 58.458, 33.180, 90.00, 102.25, 90.00
R / Rfree (%)	13.2 / 16.5

The binding sites of Manganese atom in the Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily (pdb code 3p4h). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily, PDB code: 3p4h:

Manganese binding site 1 out of 1 in the Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structures of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn118 b:11.0 occ:0.77 OD2 A:ASP17 2.2 11.9 1.0 O4 A:PO4119 2.2 13.2 0.7 NE2 A:HIS15 2.2 12.5 1.0 O A:HOH247 2.3 19.0 1.0 O A:HOH249 2.3 16.4 1.0 ND1 A:HIS9 2.3 14.8 1.0 CG A:ASP17 3.0 10.9 1.0 CE1 A:HIS9 3.1 15.0 1.0 CE1 A:HIS15 3.1 12.6 1.0 OD1 A:ASP17 3.2 16.4 1.0 CD2 A:HIS15 3.3 12.6 1.0 HE1 A:HIS15 3.3 15.1 1.0 P A:PO4119 3.4 13.4 0.7 HD2 A:HIS15 3.4 15.2 1.0 CG A:HIS9 3.5 14.5 1.0 O2 A:PO4119 3.7 17.2 0.7 O A:HOH223 3.8 15.1 1.0 CB A:HIS9 3.9 13.1 1.0 O3 A:PO4119 4.0 17.6 0.7 O A:HOH250 4.1 23.3 0.4 O A:HOH227 4.2 16.9 1.0 ND1 A:HIS15 4.3 13.4 1.0 NE2 A:HIS9 4.3 17.2 1.0 NH2 A:ARG19 4.3 12.1 1.0 CG A:HIS15 4.4 11.7 1.0 O A:HOH250 4.4 14.2 0.6 CB A:ASP17 4.4 8.7 1.0 CD2 A:HIS9 4.5 15.4 1.0 O A:HOH336 4.5 26.5 1.0 O1 A:PO4119 4.6 13.9 0.6

P.Smith, P.A.Nair, U.Das, H.Zhu, S.Shuman. Structures and Activities of Archaeal Members of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Superfamily. Nucleic Acids Res. V. 39 3310 2011.
ISSN: ISSN 0305-1048
PubMed: 21208981
DOI: 10.1093/NAR/GKQ1163