Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
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    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
      3n37
      3n39
      3n3a
      3n3b
      3n4q
      3n5u
      3n9b
      3n9d
      3nbp
      3ngf
      3nqb
      3nqw
      3nr1
      3nue
      3nv8
      3nvt
      3o1m
      3o1o
      3o1p
      3o1r
      3o3h
      3och
      3ojn
      3ol8
      3ori
      3ork
      3orl
      3orm
      3ot9
      3ov7
      3oxe
      3oy9
      3oyi
      3oyk
      3oym
      3p2u
      3p43
      3p4h
      3p71
      3pdr
      3pe7
      3pif
      3pkw
      3pkx
      3pky
      3pmn
      3prq
      3prr
      3psn
      3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure of the Pfv S217Q Mutant Intasome in Complex With Manganese (pdb 3oyi)






The binding sites of Manganese atom in the structure of Crystal Structure of the Pfv S217Q Mutant Intasome in Complex With Manganese (pdb code 3oyi). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3oyi structure was solved by S.HARE, P.CHEREPANOV, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)39.0-2.7
Space groupP41212
a (A)160.580
b (A)160.580
c (A)123.460
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21.1
Rfree (%)24.3


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 3oyi


Manganese binding site 1 out of 2 in 3oyi
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 3oyi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3oyi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp128, A: Tyr129, A: Gln217, A: Glu221, A: Asn224, D: Dc16, D: Da17, A: Hoh397, A: Hoh499, A: Hoh514, D: Hoh26,

conact list:


AtomAtomDistance (A)
MnCB A:Asp1284.50
MnOD2 A:Asp1282.18
MnOD1 A:Asp1283.49
MnCG A:Asp1283.17
MnO A:Tyr1293.97
MnOE1 A:Gln2174.65
MnOE1 A:Glu2212.42
MnOE2 A:Glu2212.17
MnCD A:Glu2212.62
MnCG A:Glu2214.14
MnND2 A:Asn2243.87
MnO3' D:Dc164.87
MnOP1 D:Da174.60
MnC3' D:Da173.39
MnC1' D:Da174.47
MnO3' D:Da172.16
MnO4' D:Da174.76
MnC5' D:Da174.61
MnC2' D:Da174.01
MnC4' D:Da173.72
MnO A:Hoh3972.37
MnO A:Hoh4994.57
MnO A:Hoh5142.68
MnO D:Hoh264.51

interactive model:


Manganese binding site 2 out of 2 in 3oyi


Manganese binding site 2 out of 2 in 3oyi
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 3oyi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 3oyi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp128, B: Tyr129, B: Asp185, B: Phe190, B: Hoh395, B: Hoh396, B: Hoh405, B: Hoh408, B: Hoh409, B: Hoh424,

conact list:


AtomAtomDistance (A)
MnCB B:Asp1284.40
MnOD2 B:Asp1283.10
MnOD1 B:Asp1282.21
MnCG B:Asp1283.00
MnCA B:Asp1284.82
MnO B:Tyr1294.54
MnN B:Tyr1294.42
MnCB B:Asp1854.41
MnOD2 B:Asp1853.28
MnOD1 B:Asp1852.08
MnCG B:Asp1853.03
MnCE2 B:Phe1904.92
MnO B:Hoh3952.13
MnO B:Hoh3961.98
MnO B:Hoh4054.16
MnO B:Hoh4084.90
MnO B:Hoh4094.37
MnO B:Hoh4243.02

interactive model:




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