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Manganese in PDB 3och: Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

Enzymatic activity of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

All present enzymatic activity of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic:
1.5.1.3;

Protein crystallography data

The structure of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic, PDB code: 3och was solved by V.Cody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.20 / 1.79
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 91.714, 91.714, 73.130, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 24.2

Other elements in 3och:

The structure of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic (pdb code 3och). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic, PDB code: 3och:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3och

Go back to Manganese Binding Sites List in 3och
Manganese binding site 1 out of 2 in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1

b:12.0
occ:1.00
O B:SER335 2.1 11.3 1.0
O B:HOH21 2.1 10.6 1.0
O B:HOH12 2.2 11.6 1.0
C B:SER335 3.4 10.5 1.0
N B:VAL336 4.2 9.9 1.0
CA B:VAL336 4.2 9.8 1.0
CA B:SER335 4.3 10.5 1.0
OE2 B:GLU334 4.4 13.3 1.0
CB B:SER335 4.4 10.4 1.0
CG B:GLU334 4.5 10.0 1.0
N B:SER335 4.6 9.2 1.0
OG B:SER335 4.9 11.5 1.0
CL B:CL365 4.9 14.6 1.0
C B:VAL336 4.9 9.6 1.0
CD B:GLU334 4.9 13.7 1.0

Manganese binding site 2 out of 2 in 3och

Go back to Manganese Binding Sites List in 3och
Manganese binding site 2 out of 2 in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn2

b:33.0
occ:1.00
OD1 B:ASP332 2.3 16.0 1.0
CG B:ASP332 3.2 18.3 1.0
OD2 B:ASP332 3.4 18.6 1.0
OD1 B:ASP331 4.0 22.8 1.0
OD2 B:ASP331 4.2 21.5 1.0
CG B:ASP331 4.4 21.6 1.0
CB B:ASP332 4.6 14.9 1.0
CA B:ASP332 4.8 14.5 1.0
N B:ASP332 4.9 14.8 1.0

Reference:

Q.Li, C.R.So, A.Fegan, V.Cody, M.Sarikaya, D.A.Vallera, C.R.Wagner. Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic. J.Am.Chem.Soc. V. 132 17247 2010.
ISSN: ISSN 0002-7863
PubMed: 21077608
DOI: 10.1021/JA107153A
Page generated: Tue Dec 15 04:13:21 2020

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