Manganese in PDB 3och: Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

Enzymatic activity of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

All present enzymatic activity of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic:
1.5.1.3;

Protein crystallography data

The structure of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic, PDB code: 3och was solved by V.Cody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	23.20 / 1.79
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	91.714, 91.714, 73.130, 90.00, 90.00, 120.00
*R / R_free (%)*	20.3 / 24.2

Other elements in 3och:

The structure of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic (pdb code 3och). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic, PDB code: 3och:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3och

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Manganese Binding Sites List in 3och

Manganese binding site 1 out of 2 in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn1 b:12.0 occ:1.00	O	B:SER335	2.1	11.3	1.0
	O	B:HOH21	2.1	10.6	1.0
	O	B:HOH12	2.2	11.6	1.0
	C	B:SER335	3.4	10.5	1.0
	N	B:VAL336	4.2	9.9	1.0
	CA	B:VAL336	4.2	9.8	1.0
	CA	B:SER335	4.3	10.5	1.0
	OE2	B:GLU334	4.4	13.3	1.0
	CB	B:SER335	4.4	10.4	1.0
	CG	B:GLU334	4.5	10.0	1.0
	N	B:SER335	4.6	9.2	1.0
	OG	B:SER335	4.9	11.5	1.0
	CL	B:CL365	4.9	14.6	1.0
	C	B:VAL336	4.9	9.6	1.0
	CD	B:GLU334	4.9	13.7	1.0

Manganese binding site 2 out of 2 in 3och

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Manganese Binding Sites List in 3och

Manganese binding site 2 out of 2 in the Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn2 b:33.0 occ:1.00	OD1	B:ASP332	2.3	16.0	1.0
	CG	B:ASP332	3.2	18.3	1.0
	OD2	B:ASP332	3.4	18.6	1.0
	OD1	B:ASP331	4.0	22.8	1.0
	OD2	B:ASP331	4.2	21.5	1.0
	CG	B:ASP331	4.4	21.6	1.0
	CB	B:ASP332	4.6	14.9	1.0
	CA	B:ASP332	4.8	14.5	1.0
	N	B:ASP332	4.9	14.8	1.0

Reference:

Q.Li, C.R.So, A.Fegan, V.Cody, M.Sarikaya, D.A.Vallera, C.R.Wagner. Chemically Self-Assembled Antibody Nanorings (Csans): Design and Characterization of An Anti-CD3 Igm Biomimetic. J.Am.Chem.Soc. V. 132 17247 2010.
ISSN: ISSN 0002-7863
PubMed: 21077608
DOI: 10.1021/JA107153A

Page generated: Sat Oct 5 17:23:04 2024

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