Atomistry » Manganese » PDB 3n39-3orm » 3o1o
Atomistry »
  Manganese »
    PDB 3n39-3orm »
      3o1o »

Manganese in PDB 3o1o: Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase

Protein crystallography data

The structure of Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase, PDB code: 3o1o was solved by C.Yi, G.Jia, G.Hou, Q.Dai, W.Zhang, G.Zheng, X.Jian, C.-G.Yang, Q.Cui, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.380, 75.930, 51.790, 90.00, 108.32, 90.00
R / Rfree (%) 17.4 / 22.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase (pdb code 3o1o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase, PDB code: 3o1o:

Manganese binding site 1 out of 1 in 3o1o

Go back to Manganese Binding Sites List in 3o1o
Manganese binding site 1 out of 1 in the Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Iron-Catalyzed Oxidation Intermediates Captured in A Dna Repair Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:14.7
occ:1.00
NE2 A:HIS187 2.2 8.8 1.0
NE2 A:HIS131 2.2 13.8 1.0
O2 A:AKG301 2.2 16.9 1.0
OD1 A:ASP133 2.3 22.4 1.0
O A:HOH461 2.4 21.7 1.0
O5 A:AKG301 2.4 12.2 1.0
C1 A:AKG301 3.0 19.3 1.0
C2 A:AKG301 3.0 15.9 1.0
CD2 A:HIS131 3.1 14.5 1.0
CE1 A:HIS187 3.1 9.4 1.0
CD2 A:HIS187 3.1 10.1 1.0
CE1 A:HIS131 3.1 13.2 1.0
CG A:ASP133 3.3 23.0 1.0
OD2 A:ASP133 3.6 24.6 1.0
NH2 A:ARG210 4.0 21.2 1.0
ND1 A:HIS131 4.2 12.7 1.0
CG A:HIS131 4.2 14.6 1.0
O A:HOH464 4.2 20.9 1.0
ND1 A:HIS187 4.2 13.0 1.0
O1 A:AKG301 4.2 19.9 1.0
CG A:HIS187 4.3 11.1 1.0
C3 A:AKG301 4.5 11.3 1.0
CB A:ASP133 4.6 23.4 1.0
CZ2 A:TRP178 4.8 13.9 1.0
C21 B:MFT8 4.8 15.7 1.0
N A:ASP133 4.9 21.9 1.0
N3 B:MFT8 5.0 17.4 1.0
O4 B:MFT8 5.0 18.5 1.0

Reference:

C.Yi, G.Jia, G.Hou, Q.Dai, W.Zhang, G.Zheng, X.Jian, C.-G.Yang, Q.Cui, C.He. Iron-Catalysed Oxidation Intermediates Captured in A Dna Repair Dioxygenase Nature V. 468 330 2010.
ISSN: ISSN 0028-0836
PubMed: 21068844
Page generated: Tue Dec 15 04:13:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy