Manganese in PDB 3ngf: Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis

All present enzymatic activity of Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis:
5.3.1.22;

The structure of Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis, PDB code: 3ngf was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.980, 120.640, 54.680, 90.00, 117.14, 90.00
R / Rfree (%)	14.1 / 17.6

The binding sites of Manganese atom in the Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis (pdb code 3ngf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis, PDB code: 3ngf:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn262 b:18.1 occ:1.00 OE1 A:GLU239 2.1 17.6 1.0 OE2 A:GLU142 2.2 10.8 1.0 OD2 A:ASP177 2.2 12.4 1.0 O A:HOH298 2.3 13.9 1.0 OE1 A:GLN203 2.3 11.8 1.0 O A:HOH332 2.5 17.6 1.0 CD A:GLU142 3.1 13.0 1.0 CD A:GLU239 3.1 20.1 1.0 CD A:GLN203 3.2 11.5 1.0 CG A:ASP177 3.2 11.4 1.0 OE1 A:GLU142 3.3 13.7 1.0 OE2 A:GLU239 3.6 26.0 1.0 CB A:ASP177 3.6 10.0 1.0 NE2 A:GLN203 3.7 10.8 1.0 NE2 A:HIS180 3.9 12.1 1.0 O A:HOH574 4.0 31.2 1.0 CD2 A:HIS180 4.0 10.7 1.0 O A:HOH363 4.3 17.8 1.0 NE2 A:GLN175 4.3 12.7 1.0 OD1 A:ASP177 4.3 12.3 1.0 CG A:GLN203 4.4 10.3 1.0 CB A:GLN203 4.4 9.8 1.0 NH2 A:ARG210 4.4 22.4 1.0 CG A:GLU142 4.5 8.9 1.0 CG A:GLU239 4.5 13.1 1.0 CB A:GLU239 4.7 11.0 1.0 CD2 A:LEU144 4.9 11.4 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn262 b:17.5 occ:1.00 OE1 B:GLU239 2.1 14.9 1.0 OE2 B:GLU142 2.1 11.8 1.0 OD2 B:ASP177 2.2 10.1 1.0 O B:HOH586 2.3 13.0 1.0 OE1 B:GLN203 2.3 14.6 1.0 O B:HOH592 2.5 17.1 1.0 CD B:GLU142 3.1 12.6 1.0 CD B:GLU239 3.1 19.8 1.0 CD B:GLN203 3.2 14.0 1.0 CG B:ASP177 3.3 11.0 1.0 OE1 B:GLU142 3.3 13.8 1.0 OE2 B:GLU239 3.4 25.8 1.0 NE2 B:GLN203 3.6 11.4 1.0 CB B:ASP177 3.6 10.9 1.0 NE2 B:HIS180 4.0 11.0 1.0 CD2 B:HIS180 4.1 10.0 1.0 O B:HOH587 4.1 30.3 1.0 O B:HOH338 4.2 18.6 1.0 NE2 B:GLN175 4.3 12.2 1.0 OD1 B:ASP177 4.4 12.4 1.0 CG B:GLN203 4.4 10.9 1.0 CG B:GLU142 4.4 11.0 1.0 CB B:GLN203 4.4 10.0 1.0 CG B:GLU239 4.4 13.0 1.0 NH2 B:ARG210 4.5 25.3 1.0 CB B:GLU239 4.7 10.9 1.0

B.Staker, T.Edwards, J.Bullen, M.Dieterich, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of Ap Endonuclease, Family 2 From Brucella Melitensis To Be Published.