Atomistry » Manganese » PDB 3n39-3orm » 3nai
Atomistry »
  Manganese »
    PDB 3n39-3orm »
      3nai »

Manganese in PDB 3nai: Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase

Protein crystallography data

The structure of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase, PDB code: 3nai was solved by K.H.Kim, J.H.Lee, I.Alam, Y.Park, S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.53 / 2.56
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.246, 196.562, 109.598, 90.00, 114.81, 90.00
R / Rfree (%) 20.3 / 26.8

Other elements in 3nai:

The structure of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase (pdb code 3nai). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase, PDB code: 3nai:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 1 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn522

b:47.7
occ:1.00
 SG A:CYS213 2.1 23.7 1.0
O A:LYS210 2.5 25.7 1.0
CB A:CYS213 3.1 23.9 1.0
MN A:MN3523 3.4 40.2 1.0
O A:GLY221 3.5 22.4 1.0
C A:LYS210 3.7 25.7 1.0
C A:GLY221 4.0 22.3 1.0
CA A:CYS213 4.4 23.9 1.0
N A:CYS213 4.4 24.2 1.0
CA A:GLU211 4.5 26.8 1.0
N A:MET222 4.5 22.6 1.0
N A:GLU211 4.5 26.2 1.0
CA A:MET222 4.6 22.8 1.0
OD2 A:ASP227 4.6 25.5 1.0
CA A:GLY221 4.6 21.9 1.0
CA A:LYS210 4.7 25.3 1.0
C A:GLU211 4.8 26.3 1.0
O A:VAL220 4.8 20.4 1.0

Manganese binding site 2 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 2 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn523

b:40.2
occ:1.00
 SG A:CYS213 2.2 23.7 1.0
O A:HOH539 2.8 2.0 1.0
O A:HOH656 2.9 13.0 1.0
N A:CYS213 3.2 24.2 1.0
N A:ILE214 3.3 23.5 1.0
MN A:MN3522 3.4 47.7 1.0
CG1 A:ILE214 3.4 23.3 1.0
O A:GLU211 3.5 26.6 1.0
CB A:CYS213 3.5 23.9 1.0
CA A:CYS213 3.7 23.9 1.0
C A:CYS213 3.9 23.9 1.0
C A:GLU211 3.9 26.3 1.0
CD1 A:ILE214 3.9 22.2 1.0
C A:THR212 4.0 24.9 1.0
CB A:ILE214 4.1 23.6 1.0
O A:LYS210 4.1 25.7 1.0
N A:THR212 4.3 26.0 1.0
CA A:ILE214 4.3 23.1 1.0
CA A:THR212 4.4 25.3 1.0
CA A:GLU211 4.6 26.8 1.0
O A:THR212 4.9 24.6 1.0
O A:CYS213 4.9 23.7 1.0

Manganese binding site 3 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 3 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn522

b:42.9
occ:1.00
 SG B:CYS213 2.2 28.9 1.0
O B:LYS210 2.6 29.5 1.0
O B:HOH551 2.6 32.1 1.0
MN B:MN3523 2.9 40.5 1.0
CB B:CYS213 3.2 27.4 1.0
O B:GLY221 3.4 28.8 1.0
C B:LYS210 3.8 29.2 1.0
C B:GLY221 3.9 28.5 1.0
N B:CYS213 4.1 27.8 1.0
CA B:CYS213 4.2 27.6 1.0
N B:MET222 4.3 28.5 1.0
CA B:MET222 4.3 28.5 1.0
CG B:LYS210 4.5 31.2 1.0
CA B:LYS210 4.6 28.8 1.0
N B:GLU211 4.7 29.6 1.0
OD2 B:ASP227 4.7 28.6 1.0
CA B:GLY221 4.7 28.0 1.0
CA B:GLU211 4.7 29.9 1.0
C B:GLU211 4.8 29.7 1.0
O B:VAL220 4.9 27.0 1.0

Manganese binding site 4 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 4 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn523

b:40.5
occ:1.00
 SG B:CYS213 2.5 28.9 1.0
O B:HOH554 2.8 13.1 1.0
MN B:MN3522 2.9 42.9 1.0
O B:HOH634 2.9 16.4 1.0
N B:CYS213 3.1 27.8 1.0
CD1 B:ILE214 3.5 24.7 1.0
N B:ILE214 3.6 26.4 1.0
CB B:CYS213 3.6 27.4 1.0
CG1 B:ILE214 3.7 25.0 1.0
CA B:CYS213 3.7 27.6 1.0
O B:GLU211 3.9 30.2 1.0
O B:LYS210 3.9 29.5 1.0
C B:CYS213 3.9 27.1 1.0
C B:THR212 4.0 27.9 1.0
C B:GLU211 4.1 29.7 1.0
CA B:THR212 4.3 28.2 1.0
CB B:ILE214 4.3 25.6 1.0
N B:THR212 4.3 29.0 1.0
CA B:ILE214 4.5 25.6 1.0
OD1 B:ASP227 4.9 31.8 1.0
CA B:GLU211 4.9 29.9 1.0
O B:CYS213 4.9 27.3 1.0
O B:THR212 4.9 28.1 1.0

Manganese binding site 5 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 5 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn522

b:46.9
occ:1.00
 SG C:CYS213 2.2 27.7 1.0
O C:LYS210 2.3 28.8 1.0
CB C:CYS213 2.8 26.4 1.0
C C:LYS210 3.5 28.6 1.0
MN C:MN3523 3.6 55.9 1.0
N C:MET222 4.0 27.0 1.0
CA C:CYS213 4.1 26.6 1.0
C C:GLY221 4.1 26.9 1.0
N C:CYS213 4.1 26.8 1.0
CG C:LYS210 4.2 30.0 1.0
CA C:MET222 4.2 27.1 1.0
CA C:LYS210 4.3 28.4 1.0
O C:GLY221 4.3 27.4 1.0
CE C:LYS210 4.5 34.2 1.0
OD2 C:ASP227 4.5 27.6 1.0
N C:GLU211 4.5 28.8 1.0
CA C:GLY221 4.6 26.4 1.0
O C:VAL220 4.6 25.0 1.0
CA C:GLU211 4.8 29.2 1.0
CB C:LYS210 4.8 28.4 1.0
C C:GLU211 4.9 28.9 1.0
CD C:LYS210 5.0 33.1 1.0

Manganese binding site 6 out of 6 in 3nai

Go back to Manganese Binding Sites List in 3nai
Manganese binding site 6 out of 6 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn523

b:55.9
occ:1.00
 SG C:CYS213 2.2 27.7 1.0
O C:GLU211 3.4 29.0 1.0
N C:ILE214 3.5 25.3 1.0
O C:HOH527 3.5 21.9 1.0
N C:CYS213 3.5 26.8 1.0
CG1 C:ILE214 3.6 23.3 1.0
MN C:MN3522 3.6 46.9 1.0
CB C:CYS213 3.8 26.4 1.0
C C:GLU211 3.8 28.9 1.0
CD1 C:ILE214 3.9 22.0 1.0
CA C:CYS213 4.0 26.6 1.0
CB C:ILE214 4.1 24.3 1.0
O C:LYS210 4.1 28.8 1.0
C C:THR212 4.1 27.3 1.0
N C:THR212 4.2 28.4 1.0
C C:CYS213 4.2 26.1 1.0
CA C:THR212 4.2 27.8 1.0
CA C:ILE214 4.4 24.5 1.0
CA C:GLU211 4.6 29.2 1.0
O C:THR212 5.0 27.3 1.0

Reference:

K.H.Kim, J.H.Lee, I.Alam, Y.Park, S.Kang. Crystal Structures and Functional Analysis of Murine Norovirus Rna-Dependent Rna Polymerase To Be Published.
Page generated: Sat Oct 5 17:18:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy