Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
      3lp1
      3lp2
      3lp3
      3lp4
      3lp7
      3lsu
      3lw6
      3lz0
      3lz1
      3lzq
      3lzr
      3m0h
      3m0j
      3m0k
      3m0l
      3m0m
      3m0v
      3m0x
      3m0y
      3m5q
      3m7v
      3m8w
      3m8y
      3m8z
      3md7
      3mds
      3mfu
      3mfv
      3mfw
      3mgr
      3mgs
      3mjl
      3mjo
      3mmr
      3moe
      3mof
      3moh
      3mpb
      3mr1
      3muc
      3mv5
      3mvh
      3mwt
      3mx6
      3mxa
      3mz4
      3n0y
      3n0z
      3n10
      3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure of Pseudomonas Stutzeri L-Rhamnose Isomerase Mutant S329L in Complex With L-Rhamnose (pdb 3m0v)






The binding sites of Manganese atom in the structure of Crystal Structure of Pseudomonas Stutzeri L-Rhamnose Isomerase Mutant S329L in Complex With L-Rhamnose (pdb code 3m0v). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3m0v structure was solved by H.YOSHIDA, K.TAKEDA, K.IZUMORI, S.KAMITORI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)47.7-1.8
Space groupP1211
a (A)74.640
b (A)104.489
c (A)111.622
alpha (°)90.00
beta (°)106.15
gamma (°)90.00
Rfactor (%)18.3
Rfree (%)21.6


Manganese Binding Sites:

Manganese binding site 1 out of 8 in 3m0v


Manganese binding site 1 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 1 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu219, A: Leu252, A: Asp254, A: His257, A: His281, A: Asp327, A: Mn502, A: Rns2001, A: Hoh492, A: Hoh570,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu2193.31
MnOE2 A:Glu2192.17
MnCD A:Glu2193.09
MnCG A:Glu2194.50
MnCD2 A:Leu2524.99
MnCB A:Asp2543.80
MnOD2 A:Asp2542.20
MnOD1 A:Asp2544.38
MnCG A:Asp2543.30
MnNE2 A:His2574.07
MnND1 A:His2574.78
MnCE1 A:His2573.81
MnNE2 A:His2814.17
MnCB A:His2813.67
MnND1 A:His2812.15
MnCD2 A:His2814.31
MnCE1 A:His2813.00
MnCG A:His2813.25
MnCB A:Asp3273.72
MnOD2 A:Asp3272.13
MnOD1 A:Asp3274.31
MnCG A:Asp3273.22
MnMN A:Mn5024.02
MnC5 A:Rns20014.82
MnO2 A:Rns20012.24
MnC4 A:Rns20014.12
MnC1 A:Rns20014.44
MnO1 A:Rns20014.92
MnC3 A:Rns20013.26
MnO3 A:Rns20012.44
MnO4 A:Rns20013.82
MnC2 A:Rns20013.02
MnO A:Hoh4924.77
MnO A:Hoh5704.05

interactive model:


Manganese binding site 2 out of 8 in 3m0v


Manganese binding site 2 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 2 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu219, A: Lys221, A: Asp254, A: His257, A: Asp289, A: Asp291, A: Asp327, B: Arg65, B: Phe66, A: Mn501, A: Rns2001, A: Hoh492, A: Hoh570,

conact list:


AtomAtomDistance (A)
MnOE2 A:Glu2194.71
MnCE A:Lys2213.87
MnCD A:Lys2214.49
MnNZ A:Lys2213.83
MnOD2 A:Asp2543.77
MnOD1 A:Asp2544.60
MnCG A:Asp2544.32
MnNE2 A:His2572.10
MnND1 A:His2574.12
MnCD2 A:His2573.19
MnCE1 A:His2572.95
MnCG A:His2574.26
MnCB A:Asp2894.36
MnOD2 A:Asp2892.15
MnOD1 A:Asp2893.26
MnCG A:Asp2893.01
MnOD2 A:Asp2914.16
MnOD1 A:Asp2914.16
MnCG A:Asp2914.59
MnOD2 A:Asp3274.23
MnNH2 B:Arg654.65
MnCZ B:Phe664.92
MnMN A:Mn5014.02
MnO2 A:Rns20012.17
MnC4 A:Rns20014.63
MnC1 A:Rns20012.81
MnO1 A:Rns20012.13
MnC3 A:Rns20014.28
MnO3 A:Rns20014.88
MnO4 A:Rns20014.00
MnC2 A:Rns20012.92
MnO A:Hoh4922.10
MnO A:Hoh5701.91

interactive model:


Manganese binding site 3 out of 8 in 3m0v


Manganese binding site 3 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 3 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu219, B: Asp254, B: His257, B: His281, B: Asp327, B: Mn504, B: Rns2002, B: Hoh477,

conact list:


AtomAtomDistance (A)
MnOE1 B:Glu2193.35
MnOE2 B:Glu2192.12
MnCD B:Glu2193.08
MnCG B:Glu2194.47
MnCB B:Asp2543.74
MnOD2 B:Asp2542.17
MnOD1 B:Asp2544.34
MnCG B:Asp2543.26
MnCA B:Asp2545.00
MnNE2 B:His2574.14
MnND1 B:His2574.82
MnCE1 B:His2573.90
MnNE2 B:His2813.97
MnCB B:His2813.63
MnND1 B:His2811.98
MnCD2 B:His2814.15
MnCE1 B:His2812.78
MnCG B:His2813.12
MnCB B:Asp3273.78
MnOD2 B:Asp3272.09
MnOD1 B:Asp3274.27
MnCG B:Asp3273.22
MnMN B:Mn5044.00
MnC5 B:Rns20024.88
MnO2 B:Rns20022.31
MnC4 B:Rns20024.24
MnC1 B:Rns20024.57
MnC3 B:Rns20023.37
MnO3 B:Rns20022.50
MnO4 B:Rns20023.98
MnC2 B:Rns20023.18
MnO B:Hoh4773.96

interactive model:


Manganese binding site 4 out of 8 in 3m0v


Manganese binding site 4 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 4 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg65, A: Phe66, B: Glu219, B: Lys221, B: Asp254, B: His257, B: Asp289, B: Asp291, B: Asp327, B: Mn503, B: Rns2002, B: Hoh477, B: Hoh527,

conact list:


AtomAtomDistance (A)
MnNH2 A:Arg654.74
MnCZ A:Phe664.95
MnOE2 B:Glu2194.66
MnCE B:Lys2213.94
MnCD B:Lys2214.39
MnNZ B:Lys2213.97
MnOD2 B:Asp2543.77
MnOD1 B:Asp2544.47
MnCG B:Asp2544.25
MnNE2 B:His2572.03
MnND1 B:His2574.04
MnCD2 B:His2573.16
MnCE1 B:His2572.86
MnCG B:His2574.21
MnCB B:Asp2894.41
MnOD2 B:Asp2892.17
MnOD1 B:Asp2893.24
MnCG B:Asp2893.03
MnOD2 B:Asp2914.18
MnOD1 B:Asp2914.18
MnCG B:Asp2914.61
MnOD2 B:Asp3274.23
MnMN B:Mn5034.00
MnO2 B:Rns20022.13
MnC4 B:Rns20024.65
MnC1 B:Rns20022.87
MnO1 B:Rns20022.23
MnC3 B:Rns20024.28
MnO3 B:Rns20024.82
MnO4 B:Rns20023.96
MnC2 B:Rns20022.95
MnO B:Hoh4772.04
MnO B:Hoh5272.25

interactive model:


Manganese binding site 5 out of 8 in 3m0v


Manganese binding site 5 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 5 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu219, C: Asp254, C: His257, C: His281, C: Asp327, C: Mn506, C: Rns2003, C: Hoh472, C: Hoh526,

conact list:


AtomAtomDistance (A)
MnOE1 C:Glu2193.35
MnOE2 C:Glu2192.17
MnCD C:Glu2193.11
MnCG C:Glu2194.50
MnCB C:Asp2543.81
MnOD2 C:Asp2542.20
MnOD1 C:Asp2544.38
MnCG C:Asp2543.31
MnNE2 C:His2574.12
MnND1 C:His2574.87
MnCE1 C:His2573.92
MnNE2 C:His2814.11
MnCB C:His2813.67
MnND1 C:His2812.11
MnCD2 C:His2814.27
MnCE1 C:His2812.94
MnCG C:His2813.22
MnCB C:Asp3273.75
MnOD2 C:Asp3271.96
MnOD1 C:Asp3274.14
MnCG C:Asp3273.12
MnMN C:Mn5064.02
MnC5 C:Rns20034.78
MnO2 C:Rns20032.24
MnC4 C:Rns20034.10
MnC1 C:Rns20034.44
MnO1 C:Rns20034.96
MnC3 C:Rns20033.20
MnO3 C:Rns20032.32
MnO4 C:Rns20033.85
MnC2 C:Rns20033.03
MnO C:Hoh4724.84
MnO C:Hoh5263.79

interactive model:


Manganese binding site 6 out of 8 in 3m0v


Manganese binding site 6 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 6 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu219, C: Lys221, C: Asp254, C: His257, C: Asp289, C: Asp291, C: Asp327, D: Arg65, D: Phe66, C: Mn505, C: Rns2003, C: Hoh472, C: Hoh526,

conact list:


AtomAtomDistance (A)
MnOE2 C:Glu2194.73
MnCE C:Lys2213.97
MnCD C:Lys2214.39
MnNZ C:Lys2213.82
MnOD2 C:Asp2543.78
MnOD1 C:Asp2544.64
MnCG C:Asp2544.35
MnNE2 C:His2572.12
MnND1 C:His2574.16
MnCD2 C:His2573.19
MnCE1 C:His2573.00
MnCG C:His2574.28
MnCB C:Asp2894.36
MnOD2 C:Asp2892.12
MnOD1 C:Asp2893.18
MnCG C:Asp2892.98
MnOD2 C:Asp2914.22
MnOD1 C:Asp2914.05
MnCG C:Asp2914.57
MnOD2 C:Asp3274.43
MnNH1 D:Arg654.57
MnCZ D:Phe664.92
MnMN C:Mn5054.02
MnO2 C:Rns20032.09
MnC4 C:Rns20034.55
MnC1 C:Rns20032.73
MnO1 C:Rns20032.10
MnC3 C:Rns20034.19
MnO3 C:Rns20034.76
MnO4 C:Rns20033.93
MnC2 C:Rns20032.84
MnO C:Hoh4722.23
MnO C:Hoh5262.10

interactive model:


Manganese binding site 7 out of 8 in 3m0v


Manganese binding site 7 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 7 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu219, D: Leu252, D: Asp254, D: His257, D: His281, D: Asp327, D: Mn508, D: Rns2004, D: Hoh442,

conact list:


AtomAtomDistance (A)
MnOE1 D:Glu2193.38
MnOE2 D:Glu2192.12
MnCD D:Glu2193.08
MnCG D:Glu2194.46
MnCD2 D:Leu2525.00
MnCB D:Asp2543.79
MnOD2 D:Asp2542.20
MnOD1 D:Asp2544.37
MnCG D:Asp2543.30
MnNE2 D:His2574.13
MnND1 D:His2574.93
MnCE1 D:His2573.98
MnNE2 D:His2814.24
MnCB D:His2813.68
MnND1 D:His2812.20
MnCD2 D:His2814.37
MnCE1 D:His2813.07
MnCG D:His2813.29
MnCB D:Asp3273.74
MnOD2 D:Asp3272.03
MnOD1 D:Asp3274.23
MnCG D:Asp3273.17
MnMN D:Mn5084.04
MnC5 D:Rns20044.67
MnO2 D:Rns20042.22
MnC4 D:Rns20044.07
MnC1 D:Rns20044.48
MnC3 D:Rns20043.24
MnO3 D:Rns20042.37
MnO4 D:Rns20043.82
MnC2 D:Rns20043.09
MnO D:Hoh4423.85

interactive model:


Manganese binding site 8 out of 8 in 3m0v


Manganese binding site 8 out of 8 in 3m0v
Click to enlarge
stereopicture of Manganese binding site 8 out of 8 in 3m0v
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Manganese in the PDB 3m0v. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Arg65, C: Phe66, D: Glu219, D: Lys221, D: Asp254, D: His257, D: Asp289, D: Asp291, D: Asp327, D: Mn507, D: Rns2004, D: Hoh442, D: Hoh481,

conact list:


AtomAtomDistance (A)
MnNH2 C:Arg654.65
MnCZ C:Phe664.98
MnOE2 D:Glu2194.67
MnCE D:Lys2214.07
MnCD D:Lys2214.46
MnNZ D:Lys2213.94
MnOD2 D:Asp2543.78
MnOD1 D:Asp2544.54
MnCG D:Asp2544.31
MnNE2 D:His2572.17
MnND1 D:His2574.22
MnCD2 D:His2573.22
MnCE1 D:His2573.07
MnCG D:His2574.33
MnCB D:Asp2894.36
MnOD2 D:Asp2892.10
MnOD1 D:Asp2893.16
MnCG D:Asp2892.96
MnOD2 D:Asp2914.11
MnOD1 D:Asp2914.05
MnCG D:Asp2914.51
MnOD2 D:Asp3274.25
MnMN D:Mn5074.04
MnO2 D:Rns20042.14
MnC4 D:Rns20044.59
MnC1 D:Rns20042.74
MnO1 D:Rns20042.12
MnC3 D:Rns20044.23
MnO3 D:Rns20044.80
MnO4 D:Rns20043.88
MnC2 D:Rns20042.87
MnO D:Hoh4422.12
MnO D:Hoh4812.26

interactive model:




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