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Manganese in PDB 3lzq: Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9

Protein crystallography data

The structure of Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9, PDB code: 3lzq was solved by T.I.Doukov, A.C.K.Chan, M.Scofield, A.B.Ramin, S.A.L.Tom-Yew, M.E.P.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.21 / 1.41
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.357, 73.619, 75.049, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.8

Other elements in 3lzq:

The structure of Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9 also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9 (pdb code 3lzq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9, PDB code: 3lzq:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3lzq

Go back to Manganese Binding Sites List in 3lzq
Manganese binding site 1 out of 2 in the Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:31.4
occ:0.50
OE2 A:GLU3 2.2 39.4 0.5
OE1 A:GLU44 2.3 21.2 1.0
OD2 A:ASP92 2.6 29.8 1.0
O A:HOH1108 2.9 26.8 1.0
O A:HOH1085 3.0 28.2 1.0
CD A:GLU3 3.2 33.8 0.5
CD A:GLU44 3.4 19.3 1.0
CG A:ASP92 3.5 25.4 1.0
OE1 A:GLU3 3.6 33.4 0.5
OD1 A:ASP92 3.7 25.1 1.0
OE2 A:GLU44 3.8 18.9 1.0
O A:HOH1062 3.8 24.4 1.0
O A:HOH1090 4.1 37.1 1.0
CG A:GLU3 4.3 32.7 0.5
CG A:GLU3 4.4 31.6 0.5
CG2 A:VAL20 4.5 18.9 1.0
OD1 A:ASP46 4.6 20.9 1.0
OD2 A:ASP46 4.6 24.8 1.0
CD A:GLU3 4.7 37.6 0.5
CG A:GLU44 4.7 16.0 1.0
CB A:ASP92 4.8 23.0 1.0
OE2 A:GLU3 4.9 42.7 0.5
CD2 A:LEU22 4.9 23.5 1.0
CB A:GLU44 5.0 16.2 1.0

Manganese binding site 2 out of 2 in 3lzq

Go back to Manganese Binding Sites List in 3lzq
Manganese binding site 2 out of 2 in the Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure Analysis of Manganese Treated P19 Protein From Campylobacter Jejuni at 1.41 A at pH 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn201

b:37.3
occ:0.25
O B:HOH1147 2.0 25.4 1.0
OE1 B:GLU44 2.2 31.8 1.0
OD1 B:ASP46 2.4 29.6 1.0
O B:HOH1137 2.7 30.7 1.0
O B:HOH1017 2.8 34.8 1.0
O B:HOH1021 3.0 36.5 1.0
OD2 B:ASP46 3.1 29.1 1.0
CG B:ASP46 3.1 25.8 1.0
CD B:GLU44 3.4 30.4 1.0
O B:HOH1064 3.7 28.3 1.0
CB B:HIS95 3.8 18.2 1.0
CG B:HIS95 3.9 17.2 1.0
ND1 B:HIS95 4.0 24.0 1.0
CB B:GLU44 4.1 23.4 1.0
OE2 B:GLU3 4.1 62.6 1.0
OE2 B:GLU44 4.1 35.6 1.0
CG B:GLU44 4.3 29.2 1.0
CG2 B:VAL20 4.4 28.5 1.0
O B:HOH1008 4.5 22.3 1.0
CD2 B:HIS95 4.5 21.9 1.0
CB B:ASP46 4.6 21.2 1.0
O B:HOH1061 4.7 41.7 1.0
CE1 B:HIS95 4.7 26.4 1.0
OD2 B:ASP92 4.8 39.7 1.0
NE2 B:HIS95 5.0 22.0 1.0

Reference:

A.C.Chan, T.I.Doukov, M.Scofield, S.A.Tom-Yew, A.B.Ramin, J.K.Mackichan, E.C.Gaynor, M.E.Murphy. Structure and Function of P19, A High-Affinity Iron Transporter of the Human Pathogen Campylobacter Jejuni. J.Mol.Biol. V. 401 590 2010.
ISSN: ISSN 0022-2836
PubMed: 20600116
DOI: 10.1016/J.JMB.2010.06.038
Page generated: Tue Dec 15 04:12:01 2020

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