Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
      3ioi
      3ioj
      3ipv
      3isd
      3itl
      3ito
      3itt
      3itv
      3itx
      3iu7
      3ivd
      3ive
      3ju9
      3jyf
      3jzv
      3k2p
      3k7v
      3k7w
      3k9s
      3kdj
      3ke6
      3kgf
      3kgz
      3ki9
      3kky
      3klu
      3kmh
      3kqn
      3kqu
      3kuy
      3kv2
      3kzi
      3l24
      3l2v
      3l2w
      3l57
      3l6b
      3l6c
      3l6r
      3l7g
      3lds
      3lel
      3lf1
      3lh7
      3lhl
      3lja
      3llm
      3loj
      3lop
      3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure of the Plasmid PCU1 Trai Relaxase Domain (pdb 3l57)






The binding sites of Manganese atom in the structure of Crystal Structure of the Plasmid PCU1 Trai Relaxase Domain (pdb code 3l57). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3l57 structure was solved by M.R.REDINBO, R.P.NASH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)48.5-2.3
Space groupP1211
a (A)50.280
b (A)58.520
c (A)87.120
alpha (°)90.00
beta (°)83.88
gamma (°)90.00
Rfactor (%)17.3
Rfree (%)22.6


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 3l57


Manganese binding site 1 out of 2 in 3l57
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 3l57
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3l57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His149, A: His160, A: His162, A: Cit321, A: Hoh410,

conact list:


AtomAtomDistance (A)
MnNE2 A:His1494.21
MnCB A:His1493.63
MnND1 A:His1492.17
MnCD2 A:His1494.32
MnCE1 A:His1493.05
MnCG A:His1493.24
MnNE2 A:His1602.15
MnND1 A:His1604.25
MnCD2 A:His1603.13
MnCE1 A:His1603.13
MnCG A:His1604.28
MnNE2 A:His1622.10
MnND1 A:His1624.21
MnCD2 A:His1623.01
MnCE1 A:His1623.14
MnCG A:His1624.19
MnC6 A:Cit3212.98
MnO5 A:Cit3212.16
MnC5 A:Cit3213.94
MnC4 A:Cit3214.08
MnC1 A:Cit3214.72
MnO1 A:Cit3214.33
MnC3 A:Cit3213.11
MnO7 A:Cit3212.23
MnO3 A:Cit3212.96
MnO4 A:Cit3214.94
MnO6 A:Cit3214.11
MnC2 A:Cit3214.19
MnO A:Hoh4104.25

interactive model:


Manganese binding site 2 out of 2 in 3l57


Manganese binding site 2 out of 2 in 3l57
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 3l57
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 3l57. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His149, B: His160, B: His162, B: Hoh319, B: Hoh355,

conact list:


AtomAtomDistance (A)
MnNE2 B:His1494.21
MnCB B:His1493.59
MnND1 B:His1492.17
MnCD2 B:His1494.31
MnCE1 B:His1493.06
MnCG B:His1493.22
MnNE2 B:His1602.36
MnND1 B:His1604.50
MnCD2 B:His1603.09
MnCE1 B:His1603.49
MnCG B:His1604.34
MnNE2 B:His1622.28
MnND1 B:His1624.42
MnCD2 B:His1622.93
MnCE1 B:His1623.47
MnCG B:His1624.20
MnO B:Hoh3194.86
MnO B:Hoh3553.09

interactive model:




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