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Manganese in PDB 3kqn: Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism

Enzymatic activity of Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism

All present enzymatic activity of Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism:
3.4.21.98; 3.6.1.15;

Protein crystallography data

The structure of Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism, PDB code: 3kqn was solved by M.Gu, C.M.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.05
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 116.764, 116.764, 71.100, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 22.3

Other elements in 3kqn:

The structure of Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism (pdb code 3kqn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism, PDB code: 3kqn:

Manganese binding site 1 out of 1 in 3kqn

Go back to Manganese Binding Sites List in 3kqn
Manganese binding site 1 out of 1 in the Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn3

b:11.4
occ:1.00
 F3 A:BEF1 2.0 7.9 1.0
O3B A:ADP2 2.2 13.8 1.0
O A:HOH628 2.2 9.0 1.0
O A:HOH4 2.2 11.8 1.0
OG A:SER211 2.2 14.3 1.0
OE1 A:GLU291 2.3 11.5 1.0
CD A:GLU291 3.2 12.5 1.0
CB A:SER211 3.3 12.9 1.0
PB A:ADP2 3.4 14.0 1.0
OE2 A:GLU291 3.4 11.1 1.0
BE A:BEF1 3.4 10.2 1.0
O2B A:ADP2 3.5 10.7 1.0
OD2 A:ASP290 3.9 15.5 1.0
OD1 A:ASP290 3.9 15.2 1.0
O2A A:ADP2 4.0 16.2 1.0
N A:SER211 4.1 13.2 1.0
O3A A:ADP2 4.2 11.7 1.0
CG A:ASP290 4.3 17.3 1.0
F1 A:BEF1 4.3 11.6 1.0
CA A:SER211 4.3 14.5 1.0
O A:HOH626 4.3 6.5 1.0
CA A:GLY417 4.4 15.8 1.0
O1B A:ADP2 4.4 13.4 1.0
F2 A:BEF1 4.5 12.4 1.0
PA A:ADP2 4.6 15.9 1.0
CG A:GLU291 4.6 11.1 1.0
CE A:LYS210 4.7 10.2 1.0
ND2 A:ASN229 4.7 11.6 1.0
O A:HOH627 4.7 9.5 1.0
CB A:LYS210 4.7 12.4 1.0
O A:GLY417 4.8 14.7 1.0
O1A A:ADP2 4.8 10.3 1.0
CZ A:PHE238 4.9 19.3 1.0
NH2 A:ARG467 4.9 8.3 1.0
C A:LYS210 5.0 14.2 1.0

Reference:

M.Gu, C.M.Rice. Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal A Ratchet Translocation Mechanism. Proc.Natl.Acad.Sci.Usa V. 107 521 2010.
ISSN: ISSN 0027-8424
PubMed: 20080715
DOI: 10.1073/PNAS.0913380107
Page generated: Sat Oct 5 16:46:04 2024

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