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Manganese in PDB 3kky: Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity

Enzymatic activity of Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity

All present enzymatic activity of Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity:
1.15.1.1;

Protein crystallography data

The structure of Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity, PDB code: 3kky was solved by L.Govindasamy, R.Mikulski, M.A.Mckenna, D.N.Silverman, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.150, 80.240, 85.410, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 20.1

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity (pdb code 3kky). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity, PDB code: 3kky:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3kky

Go back to Manganese Binding Sites List in 3kky
Manganese binding site 1 out of 2 in the Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn211

b:24.4
occ:1.00
 OD2 A:ASP172 2.0 24.8 1.0
NE2 A:HIS26 2.2 21.6 1.0
O A:HOH292 2.2 21.7 1.0
NE2 A:HIS176 2.2 21.4 1.0
NE2 A:HIS80 2.2 23.0 1.0
CG A:ASP172 3.1 24.6 1.0
CD2 A:HIS26 3.1 23.4 1.0
CE1 A:HIS26 3.1 22.4 1.0
CD2 A:HIS80 3.2 24.5 1.0
CE1 A:HIS176 3.2 22.9 1.0
CD2 A:HIS176 3.2 23.1 1.0
CE1 A:HIS80 3.2 23.9 1.0
OD1 A:ASP172 3.4 22.4 1.0
ND1 A:HIS26 4.2 22.6 1.0
CG A:HIS26 4.3 23.5 1.0
ND1 A:HIS176 4.3 21.4 1.0
ND1 A:HIS80 4.3 22.4 1.0
CG A:HIS80 4.3 21.0 1.0
CG A:HIS176 4.3 21.9 1.0
CB A:ASP172 4.4 22.4 1.0
CZ2 A:TRP133 4.4 23.3 1.0
CB A:TRP174 4.7 20.7 1.0
NE2 A:GLN151 4.7 22.4 1.0
CG A:TRP174 4.8 20.6 1.0
CH2 A:TRP133 5.0 22.1 1.0

Manganese binding site 2 out of 2 in 3kky

Go back to Manganese Binding Sites List in 3kky
Manganese binding site 2 out of 2 in the Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn211

b:22.2
occ:1.00
 OD2 B:ASP172 2.0 21.5 1.0
NE2 B:HIS26 2.2 22.5 1.0
NE2 B:HIS176 2.2 22.5 1.0
NE2 B:HIS80 2.2 22.1 1.0
O B:HOH291 2.3 20.8 1.0
CG B:ASP172 3.1 23.1 1.0
CE1 B:HIS26 3.1 23.4 1.0
CD2 B:HIS176 3.1 23.1 1.0
CD2 B:HIS26 3.2 21.7 1.0
CE1 B:HIS176 3.2 19.9 1.0
CD2 B:HIS80 3.2 20.9 1.0
CE1 B:HIS80 3.2 23.5 1.0
OD1 B:ASP172 3.5 22.8 1.0
ND1 B:HIS26 4.2 22.6 1.0
ND1 B:HIS176 4.3 22.5 1.0
CG B:HIS176 4.3 20.3 1.0
CG B:HIS26 4.3 23.3 1.0
ND1 B:HIS80 4.3 22.7 1.0
CG B:HIS80 4.3 22.1 1.0
CB B:ASP172 4.4 22.3 1.0
CZ2 B:TRP133 4.5 21.4 1.0
CB B:TRP174 4.7 21.2 1.0
NE2 B:GLN151 4.7 21.0 1.0
CG B:TRP174 4.8 19.3 1.0
CB B:ALA177 5.0 21.1 1.0

Reference:

L.Govindasamy, R.Mikulski, M.A.Mckenna, D.N.Silverman, R.Mckenna. Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans in the Orthorhombic Space Group P212121: A Case Study of Mistaken Identity To Be Published.
Page generated: Sat Oct 5 16:46:04 2024

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