Manganese in PDB 3i3m: Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T

The structure of Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T, PDB code: 3i3m was solved by B.Yu, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.79 / 1.50
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	41.444, 41.444, 116.709, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 21.4

The binding sites of Manganese atom in the Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T (pdb code 3i3m). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T, PDB code: 3i3m:

Manganese binding site 1 out of 1 in the Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Alkb in Complex with Mn(II), 2-Oxoglutarate and Methylated Trinucleotide T-Mec-T within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn300 b:7.3 occ:1.00 O2 A:AKG400 2.1 12.8 1.0 OD1 A:ASP133 2.1 12.2 1.0 NE2 A:HIS187 2.1 7.9 1.0 NE2 A:HIS131 2.2 8.3 1.0 O A:HOH601 2.3 12.7 1.0 O5 A:AKG400 2.3 9.6 1.0 C1 A:AKG400 2.9 12.3 1.0 C2 A:AKG400 2.9 11.7 1.0 CE1 A:HIS131 3.1 7.6 1.0 CG A:ASP133 3.1 12.0 1.0 CE1 A:HIS187 3.1 6.7 1.0 CD2 A:HIS187 3.1 6.8 1.0 CD2 A:HIS131 3.2 7.4 1.0 OD2 A:ASP133 3.4 14.5 1.0 O1 A:AKG400 4.0 13.4 1.0 ND1 A:HIS131 4.2 8.4 1.0 NH2 A:ARG210 4.2 12.6 1.0 ND1 A:HIS187 4.2 7.9 1.0 CG A:HIS187 4.3 6.5 1.0 CG A:HIS131 4.3 5.8 1.0 C3 A:AKG400 4.4 9.5 1.0 CB A:ASP133 4.5 11.0 1.0 CZ2 A:TRP178 4.5 9.2 1.0 O A:HOH687 4.6 17.9 1.0 C20 B:ME6502 4.6 8.7 1.0 N3 B:ME6502 4.9 9.7 1.0 N A:ASP133 4.9 10.4 1.0 CA A:ASP133 4.9 10.6 1.0 C4 A:AKG400 5.0 11.3 1.0 CH2 A:TRP178 5.0 10.6 1.0

B.Yu, J.F.Hunt. Enzymological and Structural Studies of the Mechanism of Promiscuous Substrate Recognition By the Oxidative Dna Repair Enzyme Alkb. Proc.Natl.Acad.Sci.Usa V. 106 14315 2009.
ISSN: ISSN 0027-8424
PubMed: 19706517
DOI: 10.1073/PNAS.0812938106