Manganese in PDB 3go3: Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions

The structure of Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions, PDB code: 3go3 was solved by R.Pfoh, J.A.Cuesta-Seijo, G.M.Sheldrick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	26.544, 26.544, 162.129, 90.00, 90.00, 90.00
R / Rfree (%)	16.2 / 19.6

The binding sites of Manganese atom in the Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions (pdb code 3go3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions, PDB code: 3go3:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:19.1 occ:0.50 N7 A:DG3 2.4 12.8 1.0 O A:HOH2030 2.4 30.9 1.0 O A:HOH2029 2.4 34.4 1.0 C8 A:DG3 3.3 12.5 1.0 C5 A:DG3 3.4 11.0 1.0 O6 A:DG3 3.5 12.2 1.0 C6 A:DG3 3.8 11.9 1.0 N4 C:QUI9 4.3 12.8 1.0 N9 A:DG3 4.5 10.8 1.0 C4 A:DG3 4.5 9.5 1.0 O A:HOH2014 4.6 32.3 1.0 C3 C:QUI9 4.7 12.2 1.0 O B:HOH2005 4.8 30.6 1.0 O A:HOH2004 4.9 16.3 0.5

Manganese binding site 2 out of 2 in the Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Interactions of An Echinomycin-Dna Complex with Manganese(II) Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:12.9 occ:1.00 O B:HOH2012 2.2 16.1 1.0 O B:HOH2011 2.2 15.9 1.0 O B:HOH2014 2.2 14.9 1.0 O B:HOH2013 2.2 15.5 1.0 N7 B:DG107 2.3 13.6 1.0 C8 B:DG107 3.2 14.4 1.0 C5 B:DG107 3.4 12.7 1.0 O6 B:DG107 3.7 12.7 1.0 C6 B:DG107 3.9 11.5 1.0 O B:HOH2009 4.4 17.3 1.0 N9 B:DG107 4.4 13.7 1.0 N4 C:QUI0 4.4 12.1 1.0 C4 B:DG107 4.5 12.4 1.0 C3 C:QUI0 4.8 12.0 1.0

R.Pfoh, J.A.Cuesta-Seijo, G.M.Sheldrick. Interaction of An Echinomycin-Dna Complex with Manganese Ion Acta Crystallogr.,Sect.F V. 65 660 2009.
ISSN: ESSN 1744-3091
PubMed: 19574634
DOI: 10.1107/S1744309109019654