Manganese in PDB 3fgo: Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

Enzymatic activity of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

All present enzymatic activity of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp:
3.6.3.8;

Protein crystallography data

The structure of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp, PDB code: 3fgo was solved by M.Laursen, M.Bublitz, K.Moncoq, C.Olesen, J.V.Moller, H.S.Young, P.Nissen, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	24.93 / 2.50
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	101.427, 108.872, 274.308, 90.00, 90.00, 90.00
*R / R_free (%)*	17.4 / 21.7

Other elements in 3fgo:

The structure of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Magnesium	(Mg)	4 atoms
Potassium	(K)	2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp (pdb code 3fgo). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp, PDB code: 3fgo:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 3fgo

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Manganese Binding Sites List in 3fgo

Manganese binding site 1 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn1006 b:0.4 occ:1.00	O2	A:CZA1005	2.2	0.2	1.0
	O1	A:CZA1005	2.3	0.3	1.0
	OE1	A:GLN56	2.3	0.3	1.0
	O	A:HOH1072	2.4	99.5	1.0
	O	A:HOH1133	2.7	81.1	1.0
	O	A:HOH1228	2.9	65.7	1.0
	C6	A:CZA1005	3.0	0.4	1.0
	C2	A:CZA1005	3.1	0.0	1.0
	CD	A:GLN56	3.2	0.8	1.0
	C3	A:CZA1005	3.5	0.6	1.0
	NE2	A:GLN56	3.7	0.8	1.0
	CB	A:GLN56	4.1	0.1	1.0
	O	A:GLN56	4.1	0.8	1.0
	CA	A:GLN56	4.2	0.8	1.0
	CG	A:GLN56	4.2	0.2	1.0
	C5	A:CZA1005	4.4	0.2	1.0
	C1	A:CZA1005	4.5	0.9	1.0
	CG2	A:VAL62	4.6	0.4	1.0
	O	A:ASN101	4.6	0.8	1.0
	C	A:GLN56	4.6	1.0	1.0
	OD2	A:ASP59	4.7	0.5	1.0
	C4	A:CZA1005	4.8	0.5	1.0

Manganese binding site 2 out of 3 in 3fgo

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Manganese Binding Sites List in 3fgo

Manganese binding site 2 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn1008 b:0.1 occ:0.75	O1A	A:ACP1007	2.7	94.9	0.8
	O3A	A:ACP1007	3.1	0.9	0.8
	O1B	A:ACP1007	3.1	79.3	0.8
	PA	A:ACP1007	3.3	0.8	0.8
	C3B	A:ACP1007	3.5	38.8	0.8
	O2A	A:ACP1007	3.5	0.9	0.8
	PB	A:ACP1007	3.5	98.7	0.8
	O	A:HOH1162	3.9	63.5	1.0
	NZ	A:LYS205	4.1	95.3	1.0
	O3G	A:ACP1007	4.1	0.5	0.8
	O	A:HOH1050	4.1	71.0	1.0
	PG	A:ACP1007	4.4	0.8	0.8
	CE	A:LYS205	4.5	81.8	1.0
	O	A:HOH1094	4.5	53.1	1.0
	O	A:HOH1097	4.6	46.3	1.0
	O5'	A:ACP1007	4.7	80.4	0.8
	O	A:HOH1191	4.8	78.6	1.0
	NZ	A:LYS492	4.9	78.7	1.0
	O2B	A:ACP1007	5.0	92.5	0.8

Manganese binding site 3 out of 3 in 3fgo

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Manganese Binding Sites List in 3fgo

Manganese binding site 3 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn1006 b:96.8 occ:1.00	O2	B:CZA1005	2.1	90.1	1.0
	OE1	B:GLN56	2.2	89.9	1.0
	O	B:HOH1054	2.2	86.3	1.0
	O	B:HOH1053	2.2	80.2	1.0
	O1	B:CZA1005	2.9	0.6	1.0
	CD	B:GLN56	3.0	93.2	1.0
	C6	B:CZA1005	3.1	92.0	1.0
	O	B:HOH1174	3.2	84.6	1.0
	NE2	B:GLN56	3.2	81.8	1.0
	C2	B:CZA1005	3.6	99.4	1.0
	C3	B:CZA1005	3.7	93.7	1.0
	O	B:GLN56	4.4	0.5	1.0
	C5	B:CZA1005	4.4	91.2	1.0
	CG	B:GLN56	4.4	0.1	1.0
	O	B:ASN101	4.5	93.0	1.0
	CA	B:GLY105	4.6	0.3	1.0
	OD2	B:ASP59	4.8	0.9	1.0
	CB	B:GLN56	4.9	0.5	1.0
	CG2	B:VAL62	4.9	94.8	1.0
	CA	B:GLN56	5.0	0.7	1.0
	C4	B:CZA1005	5.0	92.4	1.0

Reference:

M.Laursen, M.Bublitz, K.Moncoq, C.Olesen, J.V.Moeller, H.S.Young, P.Nissen, J.P.Morth. Cyclopiazonic Acid Is Complexed to A Divalent Metal Ion When Bound to the Sarcoplasmic Reticulum CA2+-Atpase. J.Biol.Chem. 2009.
ISSN: ESSN 1083-351X
PubMed: 19289472
DOI: 10.1074/JBC.C900031200

Page generated: Sat Oct 5 16:17:11 2024

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