Manganese in PDB 3f05: Crystal Structure of Synaptotagmin I C2A Domain with Mn(II)

The structure of Crystal Structure of Synaptotagmin I C2A Domain with Mn(II), PDB code: 3f05 was solved by F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.54 / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.549, 38.512, 44.058, 90.00, 98.70, 90.00
R / Rfree (%)	19.2 / 22.8

The binding sites of Manganese atom in the Crystal Structure of Synaptotagmin I C2A Domain with Mn(II) (pdb code 3f05). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Synaptotagmin I C2A Domain with Mn(II), PDB code: 3f05:

Manganese binding site 1 out of 1 in the Crystal Structure of Synaptotagmin I C2A Domain with Mn(II)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Synaptotagmin I C2A Domain with Mn(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn267 b:20.3 occ:1.00 OD2 A:ASP172 2.0 38.6 1.0 OD2 A:ASP232 2.2 18.3 1.0 OD2 A:ASP178 2.3 13.3 1.0 OD1 A:ASP230 2.3 10.5 1.0 O A:PHE231 2.4 9.2 1.0 O A:HOH81 2.8 26.2 1.0 CG A:ASP172 3.0 38.0 1.0 CG A:ASP230 3.1 10.9 1.0 OD2 A:ASP230 3.3 13.4 1.0 CG A:ASP178 3.3 11.0 1.0 OD1 A:ASP172 3.3 38.3 1.0 CG A:ASP232 3.4 16.8 1.0 C A:PHE231 3.5 9.4 1.0 O A:HOH455 3.6 44.2 1.0 CB A:ASP178 3.7 9.4 1.0 N A:ASP178 3.9 8.4 1.0 OD1 A:ASP232 4.2 18.8 1.0 O A:HOH452 4.2 45.3 1.0 N A:ASP232 4.3 9.5 1.0 CA A:ASP232 4.3 11.9 1.0 O A:HOH281 4.3 43.2 1.0 C A:ASP230 4.3 8.3 1.0 N A:PHE231 4.3 8.6 1.0 OD1 A:ASP178 4.4 10.6 1.0 CB A:ASP172 4.4 36.4 1.0 CB A:ASP232 4.4 14.1 1.0 CA A:ASP178 4.5 7.8 1.0 CB A:ASP230 4.5 10.0 1.0 CA A:PHE231 4.5 9.1 1.0 O A:ASP230 4.5 8.9 1.0 C A:SER177 4.6 9.0 1.0 CA A:SER177 4.7 10.4 1.0 O A:HOH59 4.7 16.0 1.0 CA A:ASP230 4.8 8.4 1.0

F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon. Cystal Structure of Synaptotagmin I C2A To Be Published.