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Manganese in PDB 3ebc: Structure of N141A Hincii with Cognate Dna

Enzymatic activity of Structure of N141A Hincii with Cognate Dna

All present enzymatic activity of Structure of N141A Hincii with Cognate Dna:
3.1.21.4;

Protein crystallography data

The structure of Structure of N141A Hincii with Cognate Dna, PDB code: 3ebc was solved by E.J.Little, A.C.Babic, N.C.Horton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.56 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.551, 91.571, 70.594, 90.00, 107.46, 90.00
R / Rfree (%) 19.1 / 27.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of N141A Hincii with Cognate Dna (pdb code 3ebc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of N141A Hincii with Cognate Dna, PDB code: 3ebc:

Manganese binding site 1 out of 1 in 3ebc

Go back to Manganese Binding Sites List in 3ebc
Manganese binding site 1 out of 1 in the Structure of N141A Hincii with Cognate Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of N141A Hincii with Cognate Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn316

b:99.8
occ:1.00
O A:HOH399 1.8 32.1 1.0
OD2 A:ASP114 2.2 27.4 1.0
O A:HOH385 2.6 29.6 1.0
OP1 F:DG8 2.8 30.0 1.0
CG A:ASP114 3.0 24.3 1.0
OD1 A:ASP114 3.1 23.4 1.0
P F:DG8 4.1 29.8 1.0
O F:HOH76 4.3 55.7 1.0
OE2 A:GLU38 4.3 43.2 1.0
O5' F:DG8 4.3 29.6 1.0
CB A:ASP114 4.4 22.8 1.0
O A:VAL128 4.4 25.9 1.0
O A:HOH330 4.5 13.8 1.0
O F:HOH323 4.8 28.4 1.0
CD A:GLU38 4.8 43.4 1.0
OE1 A:GLU38 4.8 44.2 1.0
O3' F:DC7 4.9 25.5 1.0
CA A:ASP114 4.9 22.6 1.0

Reference:

E.J.Little, A.C.Babic, N.C.Horton. Early Interrogation and Recognition of Dna Sequence By Indirect Readout Structure V. 16 1828 2008.
ISSN: ISSN 0969-2126
PubMed: 19081059
Page generated: Sat Oct 5 16:12:58 2024

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