Manganese in PDB 3dw8: Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit

All present enzymatic activity of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit:
3.1.3.16;

The structure of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit, PDB code: 3dw8 was solved by Y.Xu, Y.Chen, P.Zhang, P.D.Jeffrey, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.63 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	247.340, 121.390, 172.480, 90.00, 132.60, 90.00
R / Rfree (%)	22.8 / 28.5

The binding sites of Manganese atom in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit (pdb code 3dw8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit, PDB code: 3dw8:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn501 b:69.8 occ:1.00 OD1 C:ASN117 2.1 71.0 1.0 ND1 C:HIS241 2.1 63.8 1.0 NE2 C:HIS167 2.1 68.7 1.0 OD2 C:ASP85 2.4 51.6 1.0 CE1 C:HIS241 2.9 66.6 1.0 MN C:MN502 2.9 69.2 1.0 CE1 C:HIS167 3.0 65.0 1.0 CG C:ASN117 3.0 70.0 1.0 CG C:ASP85 3.1 53.5 1.0 OD1 C:ASP85 3.2 49.2 1.0 CD2 C:HIS167 3.2 66.3 1.0 CG C:HIS241 3.3 65.0 1.0 ND2 C:ASN117 3.6 70.2 1.0 CA C:HIS241 3.6 71.3 1.0 O C:HIS241 3.7 70.6 1.0 CB C:HIS241 3.8 69.7 1.0 CD2 C:HIS118 3.8 65.9 1.0 NE2 C:HIS241 4.1 64.3 1.0 C C:HIS241 4.1 71.5 1.0 ND1 C:HIS167 4.1 69.9 1.0 CB C:ASN117 4.2 72.5 1.0 CD2 C:HIS241 4.3 63.1 1.0 OD2 C:ASP57 4.3 72.1 1.0 CG C:HIS167 4.3 70.7 1.0 NE2 C:HIS118 4.4 57.4 1.0 N C:ASN117 4.4 71.5 1.0 CB C:ASP85 4.6 57.1 1.0 N C:HIS241 4.6 72.0 1.0 OD1 C:ASP57 4.6 64.1 1.0 O C:LEU199 4.7 70.2 1.0 NE2 C:HIS59 4.8 66.1 1.0 CA C:ASN117 4.9 74.1 1.0 CG C:ASP57 4.9 68.9 1.0 CG C:HIS118 5.0 67.9 1.0

Manganese binding site 2 out of 4 in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn502 b:69.2 occ:1.00 OD2 C:ASP85 2.0 51.6 1.0 OD2 C:ASP57 2.1 72.1 1.0 NE2 C:HIS59 2.3 66.1 1.0 MN C:MN501 2.9 69.8 1.0 CE1 C:HIS59 3.2 64.5 1.0 CG C:ASP85 3.2 53.5 1.0 CG C:ASP57 3.2 68.9 1.0 O C:HIS241 3.3 70.6 1.0 CD2 C:HIS59 3.4 63.9 1.0 OD1 C:ASP57 3.6 64.1 1.0 CB C:ASP85 3.9 57.1 1.0 O G:FGA6 4.0 0.5 1.0 C C:HIS241 4.0 71.5 1.0 CA C:HIS241 4.1 71.3 1.0 CE1 C:HIS167 4.1 65.0 1.0 CD2 C:HIS118 4.1 65.9 1.0 OD1 C:ASP85 4.1 49.2 1.0 CE1 C:PHE260 4.2 73.7 1.0 NE2 C:HIS118 4.2 57.4 1.0 NE2 C:HIS167 4.2 68.7 1.0 ND1 C:HIS59 4.3 62.5 1.0 OH C:TYR265 4.4 73.0 1.0 CB C:ASP57 4.4 68.7 1.0 OD1 C:ASN117 4.5 71.0 1.0 CG C:HIS59 4.5 61.1 1.0 ND1 C:HIS241 4.5 63.8 1.0 CZ C:PHE260 4.6 75.2 1.0 N C:HIS241 4.9 72.0 1.0 C G:FGA6 5.0 0.1 1.0

Manganese binding site 3 out of 4 in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn511 b:82.6 occ:1.00 OD1 F:ASN117 2.0 82.7 1.0 ND1 F:HIS241 2.1 76.3 1.0 NE2 F:HIS167 2.1 88.4 1.0 OD2 F:ASP85 2.8 86.7 1.0 CE1 F:HIS241 2.9 75.0 1.0 CG F:ASN117 3.0 84.9 1.0 CD2 F:HIS167 3.0 90.2 1.0 CE1 F:HIS167 3.1 86.7 1.0 MN F:MN512 3.2 91.8 1.0 CG F:HIS241 3.2 76.7 1.0 OD1 F:ASP85 3.3 82.6 1.0 CG F:ASP85 3.3 83.9 1.0 ND2 F:ASN117 3.5 82.9 1.0 CA F:HIS241 3.5 81.7 1.0 CB F:HIS241 3.7 77.1 1.0 CD2 F:HIS118 3.8 85.6 1.0 O F:HIS241 3.9 84.1 1.0 OD2 F:ASP57 4.0 77.8 1.0 NE2 F:HIS241 4.1 72.3 1.0 CG F:HIS167 4.1 90.7 1.0 ND1 F:HIS167 4.1 89.0 1.0 CB F:ASN117 4.1 86.0 1.0 C F:HIS241 4.2 83.3 1.0 CD2 F:HIS241 4.2 76.0 1.0 NE2 F:HIS118 4.4 87.2 1.0 N F:ASN117 4.4 87.2 1.0 N F:HIS241 4.6 80.4 1.0 O F:LEU199 4.7 87.8 1.0 OD1 F:ASP57 4.7 74.2 1.0 CB F:ASP85 4.8 82.7 1.0 CA F:ASN117 4.8 86.4 1.0 CG F:ASP57 4.8 74.7 1.0 CG F:HIS118 5.0 86.3 1.0

Manganese binding site 4 out of 4 in the Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of A Protein Phosphatase 2A Holoenzyme with B55 Subunit within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn512 b:91.8 occ:1.00 OD2 F:ASP85 2.0 86.7 1.0 OD2 F:ASP57 2.1 77.8 1.0 NE2 F:HIS59 2.3 81.4 1.0 CG F:ASP57 3.1 74.7 1.0 CE1 F:HIS59 3.1 74.9 1.0 MN F:MN511 3.2 82.6 1.0 CG F:ASP85 3.2 83.9 1.0 CD2 F:HIS59 3.4 79.4 1.0 O F:HIS241 3.5 84.1 1.0 OD1 F:ASP57 3.7 74.2 1.0 O H:FGA6 3.8 0.6 1.0 CE1 F:PHE260 3.9 90.8 1.0 CB F:ASP85 4.0 82.7 1.0 CD2 F:HIS118 4.0 85.6 1.0 CZ F:PHE260 4.1 89.4 1.0 OD1 F:ASP85 4.1 82.6 1.0 NE2 F:HIS118 4.1 87.2 1.0 CB F:ASP57 4.1 75.4 1.0 NE2 F:HIS167 4.3 88.4 1.0 C F:HIS241 4.3 83.3 1.0 CA F:HIS241 4.3 81.7 1.0 OH F:TYR265 4.3 77.8 1.0 ND1 F:HIS59 4.3 77.9 1.0 CE1 F:HIS167 4.3 86.7 1.0 CG F:HIS59 4.5 77.4 1.0 OD1 F:ASN117 4.6 82.7 1.0 ND1 F:HIS241 4.7 76.3 1.0 C H:FGA6 4.8 0.5 1.0 CZ F:TYR265 4.9 81.1 1.0 N F:HIS241 5.0 80.4 1.0

Y.Xu, Y.Chen, P.Zhang, P.D.Jeffrey, Y.Shi. Structure of A Protein Phosphatase 2A Holoenzyme: Insights Into B55-Mediated Tau Dephosphorylation. Mol.Cell V. 31 873 2008.
ISSN: ISSN 1097-2765
PubMed: 18922469
DOI: 10.1016/J.MOLCEL.2008.08.006