Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
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    PDB 1j54-1kx3
    PDB 1kx4-1mav
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    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
      3bu0
      3buc
      3bz1
      3bz2
      3bza
      3bzj
      3c0q
      3c0s
      3c2k
      3c2l
      3c2m
      3c3s
      3c3t
      3c5m
      3cev
      3ck2
      3ckn
      3ckq
      3cm5
      3cna
      3cqw
      3csb
      3ctz
      3cu0
      3d27
      3d2o
      3d4k
      3dbn
      3dc5
      3dc6
      3diy
      3dj8
      3dkx
      3dky
      3dsd
      3dt2
      3dt4
      3dt7
      3dtb
      3dw8
      3dw9
      3dx5
      3dy8
      3dyl
      3dys
      3e44
      3e6k
      3e6v
      3e7a
      3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of E. Coli Methionine Aminopeptidase With Fe Inhibitor W29 (pdb 3d27)






The binding sites of Manganese atom in the structure of E. Coli Methionine Aminopeptidase With Fe Inhibitor W29 (pdb code 3d27). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 3d27 structure was solved by Q.Z.YE, S.CHAI, H.Z.HE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)26.9-2.2
Space groupP1211
a (A)38.510
b (A)59.880
c (A)54.880
alpha (°)90.00
beta (°)106.47
gamma (°)90.00
Rfactor (%)19.1
Rfree (%)24.4


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 3d27


Manganese binding site 1 out of 2 in 3d27
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 3d27
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 3d27. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp108, A: His171, A: Phe177, A: His178, A: Thr202, A: Glu204, A: Glu235, A: Mn2, A: W29265, A: Hoh386,

conact list:


AtomAtomDistance (A)
MnCB A:Asp1084.26
MnOD2 A:Asp1082.24
MnOD1 A:Asp1083.47
MnCG A:Asp1083.08
MnNE2 A:His1712.32
MnND1 A:His1714.45
MnCD2 A:His1713.15
MnCE1 A:His1713.40
MnCG A:His1714.37
MnCE1 A:Phe1774.58
MnNE2 A:His1784.41
MnCD2 A:His1784.96
MnCB A:Thr2024.45
MnCG2 A:Thr2024.30
MnOG1 A:Thr2023.86
MnOE1 A:Glu2043.54
MnOE2 A:Glu2042.31
MnCD A:Glu2043.19
MnCG A:Glu2044.43
MnOE1 A:Glu2353.48
MnOE2 A:Glu2352.28
MnCD A:Glu2353.23
MnCG A:Glu2354.60
MnMN A:Mn23.38
MnC03 A:W292654.56
MnO1 A:W292652.42
MnC05 A:W292653.22
MnO2 A:W292652.36
MnC10 A:W292653.20
MnC06 A:W292654.54
MnO A:Hoh3864.84

interactive model:


Manganese binding site 2 out of 2 in 3d27


Manganese binding site 2 out of 2 in 3d27
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 3d27
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 3d27. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp97, A: Val98, A: Thr99, A: Asp108, A: Thr109, A: Glu204, A: Glu235, A: Mn1, A: W29265, A: Hoh272, A: Hoh386, A: Hoh388,

conact list:


AtomAtomDistance (A)
MnCB A:Asp974.12
MnOD2 A:Asp972.61
MnC A:Asp974.87
MnOD1 A:Asp972.06
MnCG A:Asp972.64
MnCA A:Asp974.81
MnO A:Val984.30
MnN A:Val984.74
MnC A:Val984.87
MnOG1 A:Thr993.88
MnCB A:Asp1084.52
MnOD2 A:Asp1083.49
MnC A:Asp1084.71
MnOD1 A:Asp1082.23
MnCG A:Asp1083.19
MnCA A:Asp1084.86
MnO A:Thr1094.63
MnN A:Thr1094.41
MnC A:Thr1094.76
MnCA A:Thr1094.98
MnOE1 A:Glu2044.39
MnOE2 A:Glu2044.82
MnCD A:Glu2044.88
MnOE1 A:Glu2352.15
MnCB A:Glu2354.86
MnOE2 A:Glu2353.46
MnCD A:Glu2353.13
MnCG A:Glu2354.45
MnMN A:Mn13.38
MnC04 A:W292654.81
MnO1 A:W292654.54
MnC05 A:W292654.20
MnO2 A:W292652.01
MnC10 A:W292653.04
MnC06 A:W292653.46
MnO A:Hoh2723.65
MnO A:Hoh3862.42
MnO A:Hoh3884.74

interactive model:




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