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Manganese in PDB 3c3s: Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase

Enzymatic activity of Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase

All present enzymatic activity of Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase:
1.15.1.1;

Protein crystallography data

The structure of Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase, PDB code: 3c3s was solved by P.S.Quint, J.F.Domsic, D.E.Cabelli, R.Mckenna, D.N.Silverman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 2.50
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 81.270, 81.270, 242.501, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 22.1

Manganese Binding Sites:

The binding sites of Manganese atom in the Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase (pdb code 3c3s). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase, PDB code: 3c3s:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3c3s

Go back to Manganese Binding Sites List in 3c3s
Manganese binding site 1 out of 2 in the Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn199

b:21.7
occ:1.00
OD1 A:ASP159 2.0 18.3 1.0
O A:HOH338 2.0 31.1 1.0
NE2 A:HIS74 2.1 18.0 1.0
NE2 A:HIS26 2.2 20.6 1.0
NE2 A:HIS163 2.3 20.1 1.0
CE1 A:HIS74 3.0 17.3 1.0
CE1 A:HIS26 3.0 20.3 1.0
CG A:ASP159 3.1 19.5 1.0
CD2 A:HIS74 3.1 16.3 1.0
CE1 A:HIS163 3.2 19.3 1.0
CD2 A:HIS26 3.2 19.5 1.0
CD2 A:HIS163 3.3 22.1 1.0
OD2 A:ASP159 3.5 19.6 1.0
CZ2 A:TRP123 4.0 14.3 1.0
ND1 A:HIS74 4.1 16.1 1.0
ND1 A:HIS26 4.2 18.6 1.0
CG A:HIS74 4.2 18.4 1.0
CG A:HIS26 4.3 20.5 1.0
CB A:ASP159 4.3 18.7 1.0
ND1 A:HIS163 4.3 20.8 1.0
NE2 A:GLN143 4.4 16.4 1.0
CG A:HIS163 4.4 21.4 1.0
CH2 A:TRP123 4.5 11.9 1.0
CB A:TRP161 4.5 15.4 1.0
CG A:TRP161 4.7 15.4 1.0
CE2 A:TRP123 4.9 12.7 1.0
CB A:ALA164 4.9 19.8 1.0
CD1 A:TRP161 5.0 16.6 1.0

Manganese binding site 2 out of 2 in 3c3s

Go back to Manganese Binding Sites List in 3c3s
Manganese binding site 2 out of 2 in the Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn199

b:20.7
occ:1.00
OD1 B:ASP159 1.9 18.6 1.0
O B:HOH337 2.0 32.2 1.0
NE2 B:HIS74 2.0 15.1 1.0
NE2 B:HIS26 2.2 19.4 1.0
NE2 B:HIS163 2.2 17.3 1.0
CE1 B:HIS74 2.9 14.4 1.0
CG B:ASP159 3.0 19.1 1.0
CE1 B:HIS26 3.1 19.1 1.0
CD2 B:HIS74 3.1 15.8 1.0
CE1 B:HIS163 3.1 19.6 1.0
CD2 B:HIS26 3.2 18.5 1.0
CD2 B:HIS163 3.3 18.3 1.0
OD2 B:ASP159 3.4 20.0 1.0
ND1 B:HIS74 4.0 16.4 1.0
CZ2 B:TRP123 4.1 14.7 1.0
CG B:HIS74 4.2 16.4 1.0
ND1 B:HIS26 4.2 16.6 1.0
CB B:ASP159 4.3 19.0 1.0
ND1 B:HIS163 4.3 20.8 1.0
CG B:HIS26 4.3 19.0 1.0
CG B:HIS163 4.4 19.3 1.0
CB B:TRP161 4.5 15.8 1.0
NE2 B:GLN143 4.5 10.0 1.0
CG B:TRP161 4.7 16.3 1.0
CH2 B:TRP123 4.7 13.3 1.0
CB B:ALA164 4.9 13.6 1.0
CE2 B:TRP123 4.9 13.9 1.0

Reference:

P.S.Quint, J.F.Domsic, D.E.Cabelli, R.Mckenna, D.N.Silverman. Role of A Glutamate Bridge Spanning the Dimeric Interface of Human Manganese Superoxide Dismutase. Biochemistry V. 47 4621 2008.
ISSN: ISSN 0006-2960
PubMed: 18373354
DOI: 10.1021/BI7024518
Page generated: Tue Dec 15 04:08:24 2020

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