Manganese in PDB 3bu0: Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors

The structure of Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors, PDB code: 3bu0 was solved by C.-G.Yang, C.Yi, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	77.591, 77.591, 227.051, 90.00, 90.00, 120.00
R / Rfree (%)	23 / 28.4

The binding sites of Manganese atom in the Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors (pdb code 3bu0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors, PDB code: 3bu0:

Manganese binding site 1 out of 1 in the Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human ABH2 Cross-Linked to Dsdna with Cofactors within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:33.7 occ:1.00 O5 A:AKG301 2.1 35.5 1.0 O A:HOH451 2.1 35.7 1.0 NE2 A:HIS236 2.2 32.9 1.0 NE2 A:HIS171 2.2 36.2 1.0 O2 A:AKG301 2.3 43.6 1.0 OD1 A:ASP173 2.4 41.3 1.0 OD2 A:ASP173 2.8 42.4 1.0 C2 A:AKG301 2.9 37.8 1.0 C1 A:AKG301 2.9 41.3 1.0 CG A:ASP173 3.0 41.2 1.0 CE1 A:HIS171 3.1 36.9 1.0 CE1 A:HIS236 3.2 32.2 1.0 CD2 A:HIS236 3.2 32.6 1.0 CD2 A:HIS171 3.3 35.7 1.0 NH2 A:ARG254 4.0 38.4 1.0 O1 A:AKG301 4.2 44.3 1.0 ND1 A:HIS171 4.2 36.6 1.0 ND1 A:HIS236 4.3 33.0 1.0 CG A:HIS171 4.3 36.2 1.0 CG A:HIS236 4.3 32.6 1.0 C3 A:AKG301 4.4 35.3 1.0 CB A:ASP173 4.5 40.7 1.0 C4 A:AKG301 4.9 32.8 1.0 CZ A:ARG254 5.0 37.1 1.0

C.G.Yang, C.Yi, E.M.Duguid, C.T.Sullivan, X.Jian, P.A.Rice, C.He. Crystal Structures of Dna/Rna Repair Enzymes Alkb and ABH2 Bound to Dsdna. Nature V. 452 961 2008.
ISSN: ISSN 0028-0836
PubMed: 18432238
DOI: 10.1038/NATURE06889